Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1386 and Dsui_1387 are separated by 88 nucleotides Dsui_1387 and Dsui_1388 overlap by 4 nucleotides Dsui_1388 and Dsui_1389 are separated by 3 nucleotides Dsui_1389 and Dsui_1390 are separated by 18 nucleotides
Dsui_1386: Dsui_1386 - family 3 adenylate cyclase, at 1,442,701 to 1,444,017
_1386
Dsui_1387: Dsui_1387 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,444,106 to 1,444,822
_1387
Dsui_1388: Dsui_1388 - hypothetical protein, at 1,444,819 to 1,446,975
_1388
Dsui_1389: Dsui_1389 - hypothetical protein, at 1,446,979 to 1,447,482
_1389
Dsui_1390: Dsui_1390 - hypothetical protein, at 1,447,501 to 1,448,100
_1390
Position (kb) 1444
1445
1446
1447 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1443.889 kb on + strand at 1443.891 kb on + strand at 1443.902 kb on + strand at 1443.915 kb on - strand at 1444.050 kb on + strand at 1444.338 kb on - strand, within Dsui_1387 at 1444.350 kb on - strand, within Dsui_1387 at 1444.378 kb on + strand at 1444.428 kb on - strand, within Dsui_1387 at 1444.501 kb on + strand, within Dsui_1387 at 1444.501 kb on + strand at 1444.509 kb on - strand, within Dsui_1387 at 1444.509 kb on - strand, within Dsui_1387 at 1444.585 kb on - strand, within Dsui_1387 at 1444.646 kb on + strand, within Dsui_1387 at 1444.794 kb on - strand at 1444.818 kb on - strand at 1444.862 kb on - strand at 1444.950 kb on + strand at 1445.063 kb on + strand, within Dsui_1388 at 1445.147 kb on - strand at 1445.246 kb on + strand, within Dsui_1388 at 1445.259 kb on - strand, within Dsui_1388 at 1445.698 kb on + strand at 1445.709 kb on + strand at 1445.717 kb on - strand at 1445.790 kb on + strand at 1445.921 kb on - strand at 1445.963 kb on - strand, within Dsui_1388 at 1446.007 kb on + strand, within Dsui_1388 at 1446.007 kb on + strand at 1446.010 kb on - strand at 1446.089 kb on - strand at 1446.193 kb on + strand at 1446.193 kb on + strand at 1446.327 kb on + strand at 1446.540 kb on + strand, within Dsui_1388 at 1446.540 kb on + strand, within Dsui_1388 at 1446.556 kb on + strand, within Dsui_1388 at 1446.577 kb on - strand at 1446.580 kb on + strand, within Dsui_1388 at 1446.793 kb on + strand at 1447.089 kb on + strand at 1447.130 kb on - strand at 1447.277 kb on - strand at 1447.293 kb on + strand, within Dsui_1389 at 1447.299 kb on - strand, within Dsui_1389 at 1447.325 kb on + strand at 1447.450 kb on + strand at 1447.536 kb on - strand at 1447.550 kb on + strand at 1447.558 kb on - strand at 1447.558 kb on - strand at 1447.734 kb on - strand, within Dsui_1390 at 1447.735 kb on + strand at 1447.837 kb on + strand at 1447.897 kb on - strand, within Dsui_1390 at 1447.897 kb on - strand at 1447.926 kb on + strand at 1447.937 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,443,889 + -3.3 1,443,891 + +0.6 1,443,902 + -1.4 1,443,915 - -1.3 1,444,050 + +0.6 1,444,338 - Dsui_1387 0.32 +0.6 1,444,350 - Dsui_1387 0.34 +0.6 1,444,378 + -0.4 1,444,428 - Dsui_1387 0.45 -2.6 1,444,501 + Dsui_1387 0.55 -0.4 1,444,501 + +0.6 1,444,509 - Dsui_1387 0.56 +0.6 1,444,509 - Dsui_1387 0.56 +0.6 1,444,585 - Dsui_1387 0.67 -1.4 1,444,646 + Dsui_1387 0.75 +0.6 1,444,794 - -0.4 1,444,818 - -2.6 1,444,862 - -1.0 1,444,950 + -1.0 1,445,063 + Dsui_1388 0.11 -2.8 1,445,147 - -0.4 1,445,246 + Dsui_1388 0.20 +0.6 1,445,259 - Dsui_1388 0.20 +0.6 1,445,698 + +0.6 1,445,709 + +0.6 1,445,717 - +0.6 1,445,790 + +0.6 1,445,921 - +0.6 1,445,963 - Dsui_1388 0.53 -1.0 1,446,007 + Dsui_1388 0.55 +0.6 1,446,007 + -0.4 1,446,010 - +0.6 1,446,089 - +0.6 1,446,193 + +0.6 1,446,193 + -1.0 1,446,327 + +0.6 1,446,540 + Dsui_1388 0.80 -1.0 1,446,540 + Dsui_1388 0.80 -1.0 1,446,556 + Dsui_1388 0.81 -1.4 1,446,577 - +0.6 1,446,580 + Dsui_1388 0.82 +0.6 1,446,793 + -1.4 1,447,089 + -1.0 1,447,130 - -1.7 1,447,277 - +0.6 1,447,293 + Dsui_1389 0.62 -1.7 1,447,299 - Dsui_1389 0.63 -0.4 1,447,325 + -0.4 1,447,450 + -0.4 1,447,536 - -0.4 1,447,550 + -0.4 1,447,558 - -2.7 1,447,558 - +0.6 1,447,734 - Dsui_1390 0.39 -1.0 1,447,735 + +0.6 1,447,837 + +0.6 1,447,897 - Dsui_1390 0.66 -1.7 1,447,897 - -1.4 1,447,926 + +0.6 1,447,937 + -1.0
Or see this region's nucleotide sequence