Strain Fitness in Dechlorosoma suillum PS around Dsui_1286

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1284 and Dsui_1285 overlap by 4 nucleotidesDsui_1285 and Dsui_1286 overlap by 4 nucleotidesDsui_1286 and Dsui_1287 overlap by 10 nucleotides Dsui_1284: Dsui_1284 - hypothetical protein, at 1,344,825 to 1,345,418 _1284 Dsui_1285: Dsui_1285 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,345,415 to 1,346,239 _1285 Dsui_1286: Dsui_1286 - hypothetical protein, at 1,346,236 to 1,346,712 _1286 Dsui_1287: Dsui_1287 - hypothetical protein, at 1,346,703 to 1,351,481 _1287 Position (kb) 1346 1347Strain fitness (log2 ratio) -3 -2 -1 0 1at 1345.326 kb on + strand, within Dsui_1284at 1345.330 kb on - strand, within Dsui_1284at 1345.339 kb on - strand, within Dsui_1284at 1345.451 kb on - strandat 1345.451 kb on - strandat 1345.451 kb on - strandat 1345.504 kb on + strand, within Dsui_1285at 1345.558 kb on - strand, within Dsui_1285at 1345.564 kb on + strand, within Dsui_1285at 1345.596 kb on - strand, within Dsui_1285at 1345.603 kb on + strand, within Dsui_1285at 1345.621 kb on + strand, within Dsui_1285at 1345.621 kb on + strand, within Dsui_1285at 1345.764 kb on + strand, within Dsui_1285at 1345.766 kb on - strand, within Dsui_1285at 1345.808 kb on - strand, within Dsui_1285at 1345.897 kb on - strand, within Dsui_1285at 1345.917 kb on - strand, within Dsui_1285at 1345.953 kb on + strand, within Dsui_1285at 1346.040 kb on - strand, within Dsui_1285at 1346.047 kb on + strand, within Dsui_1285at 1346.050 kb on - strand, within Dsui_1285at 1346.075 kb on - strand, within Dsui_1285at 1346.137 kb on + strand, within Dsui_1285at 1346.327 kb on + strand, within Dsui_1286at 1346.358 kb on - strand, within Dsui_1286at 1346.449 kb on + strand, within Dsui_1286at 1346.457 kb on - strand, within Dsui_1286at 1346.457 kb on - strand, within Dsui_1286at 1346.499 kb on - strand, within Dsui_1286at 1346.512 kb on + strand, within Dsui_1286at 1346.520 kb on - strand, within Dsui_1286at 1346.535 kb on - strand, within Dsui_1286at 1346.535 kb on - strand, within Dsui_1286at 1346.537 kb on + strand, within Dsui_1286at 1346.558 kb on + strand, within Dsui_1286at 1346.568 kb on - strand, within Dsui_1286at 1346.579 kb on + strand, within Dsui_1286at 1346.604 kb on - strand, within Dsui_1286at 1346.632 kb on + strand, within Dsui_1286at 1346.650 kb on - strand, within Dsui_1286at 1346.727 kb on + strandat 1346.782 kb on - strandat 1346.788 kb on - strandat 1346.818 kb on - strandat 1346.872 kb on - strandat 1346.910 kb on - strandat 1346.924 kb on + strandat 1346.929 kb on + strandat 1346.997 kb on - strandat 1347.010 kb on + strandat 1347.027 kb on + strandat 1347.042 kb on + strandat 1347.053 kb on + strandat 1347.061 kb on + strandat 1347.079 kb on - strandat 1347.082 kb on + strandat 1347.082 kb on + strandat 1347.094 kb on + strandat 1347.125 kb on - strandat 1347.125 kb on - strandat 1347.125 kb on - strandat 1347.135 kb on - strandat 1347.164 kb on + strandat 1347.164 kb on + strandat 1347.184 kb on - strand, within Dsui_1287at 1347.244 kb on + strand, within Dsui_1287at 1347.252 kb on - strand, within Dsui_1287at 1347.252 kb on - strandat 1347.309 kb on + strand, within Dsui_1287at 1347.317 kb on - strand, within Dsui_1287at 1347.357 kb on + strand, within Dsui_1287at 1347.365 kb on + strand, within Dsui_1287at 1347.365 kb on - strand, within Dsui_1287at 1347.365 kb on - strand, within Dsui_1287at 1347.515 kb on - strand, within Dsui_1287at 1347.522 kb on - strand, within Dsui_1287at 1347.615 kb on + strand, within Dsui_1287at 1347.615 kb on + strand, within Dsui_1287at 1347.622 kb on + strand, within Dsui_1287at 1347.623 kb on - strand, within Dsui_1287at 1347.672 kb on - strand, within Dsui_1287at 1347.688 kb on - strand, within Dsui_1287

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,345,326 + Dsui_1284 0.84 +0.6
1,345,330 - Dsui_1284 0.85 -1.4
1,345,339 - Dsui_1284 0.87 +0.6
1,345,451 - -1.0
1,345,451 - +0.6
1,345,451 - -1.0
1,345,504 + Dsui_1285 0.11 +0.6
1,345,558 - Dsui_1285 0.17 +0.6
1,345,564 + Dsui_1285 0.18 +0.7
1,345,596 - Dsui_1285 0.22 -0.7
1,345,603 + Dsui_1285 0.23 +1.2
1,345,621 + Dsui_1285 0.25 +0.5
1,345,621 + Dsui_1285 0.25 +0.7
1,345,764 + Dsui_1285 0.42 +0.5
1,345,766 - Dsui_1285 0.43 +0.6
1,345,808 - Dsui_1285 0.48 -0.4
1,345,897 - Dsui_1285 0.58 +0.6
1,345,917 - Dsui_1285 0.61 +1.6
1,345,953 + Dsui_1285 0.65 +0.3
1,346,040 - Dsui_1285 0.76 -0.4
1,346,047 + Dsui_1285 0.77 +0.8
1,346,050 - Dsui_1285 0.77 -0.4
1,346,075 - Dsui_1285 0.80 -1.7
1,346,137 + Dsui_1285 0.88 +0.4
1,346,327 + Dsui_1286 0.19 +0.9
1,346,358 - Dsui_1286 0.26 -1.0
1,346,449 + Dsui_1286 0.45 +0.5
1,346,457 - Dsui_1286 0.46 +0.6
1,346,457 - Dsui_1286 0.46 -2.2
1,346,499 - Dsui_1286 0.55 -0.4
1,346,512 + Dsui_1286 0.58 +0.4
1,346,520 - Dsui_1286 0.60 -0.4
1,346,535 - Dsui_1286 0.63 -1.4
1,346,535 - Dsui_1286 0.63 +0.6
1,346,537 + Dsui_1286 0.63 +0.6
1,346,558 + Dsui_1286 0.68 +0.6
1,346,568 - Dsui_1286 0.70 -0.4
1,346,579 + Dsui_1286 0.72 +0.5
1,346,604 - Dsui_1286 0.77 +0.6
1,346,632 + Dsui_1286 0.83 +0.8
1,346,650 - Dsui_1286 0.87 +0.6
1,346,727 + -0.4
1,346,782 - -3.1
1,346,788 - +0.6
1,346,818 - -0.4
1,346,872 - +0.6
1,346,910 - -1.4
1,346,924 + -0.1
1,346,929 + +0.6
1,346,997 - +0.6
1,347,010 + +0.4
1,347,027 + +0.3
1,347,042 + +0.1
1,347,053 + +0.6
1,347,061 + +0.6
1,347,079 - +0.6
1,347,082 + +0.6
1,347,082 + +0.4
1,347,094 + +0.5
1,347,125 - +0.6
1,347,125 - -1.7
1,347,125 - -2.2
1,347,135 - +0.6
1,347,164 + +0.2
1,347,164 + +0.7
1,347,184 - Dsui_1287 0.10 -0.4
1,347,244 + Dsui_1287 0.11 +0.6
1,347,252 - Dsui_1287 0.11 +0.6
1,347,252 - +0.6
1,347,309 + Dsui_1287 0.13 +0.8
1,347,317 - Dsui_1287 0.13 -0.4
1,347,357 + Dsui_1287 0.14 +0.4
1,347,365 + Dsui_1287 0.14 +1.7
1,347,365 - Dsui_1287 0.14 -1.4
1,347,365 - Dsui_1287 0.14 -0.4
1,347,515 - Dsui_1287 0.17 -2.0
1,347,522 - Dsui_1287 0.17 -0.4
1,347,615 + Dsui_1287 0.19 +0.5
1,347,615 + Dsui_1287 0.19 +0.8
1,347,622 + Dsui_1287 0.19 +0.6
1,347,623 - Dsui_1287 0.19 +0.6
1,347,672 - Dsui_1287 0.20 -1.0
1,347,688 - Dsui_1287 0.21 +0.6

Or see this region's nucleotide sequence