Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1280 and Dsui_1281 are separated by 541 nucleotides Dsui_1281 and Dsui_1282 are separated by 24 nucleotides Dsui_1282 and Dsui_1283 are separated by 23 nucleotides Dsui_1283 and Dsui_1284 overlap by 14 nucleotides
Dsui_1280: Dsui_1280 - type II secretory pathway, component PulF, at 1,341,560 to 1,342,789
_1280
Dsui_1281: Dsui_1281 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,343,331 to 1,343,867
_1281
Dsui_1282: Dsui_1282 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,343,892 to 1,344,338
_1282
Dsui_1283: Dsui_1283 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,344,362 to 1,344,838
_1283
Dsui_1284: Dsui_1284 - hypothetical protein, at 1,344,825 to 1,345,418
_1284
Position (kb)
1343
1344 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1342.377 kb on - strand, within Dsui_1280 at 1342.411 kb on + strand, within Dsui_1280 at 1342.416 kb on + strand, within Dsui_1280 at 1342.427 kb on + strand, within Dsui_1280 at 1342.435 kb on + strand, within Dsui_1280 at 1342.435 kb on + strand, within Dsui_1280 at 1342.450 kb on + strand, within Dsui_1280 at 1342.450 kb on + strand, within Dsui_1280 at 1342.450 kb on + strand, within Dsui_1280 at 1342.458 kb on - strand, within Dsui_1280 at 1342.468 kb on - strand, within Dsui_1280 at 1342.505 kb on + strand, within Dsui_1280 at 1342.505 kb on + strand, within Dsui_1280 at 1342.513 kb on - strand, within Dsui_1280 at 1342.513 kb on - strand, within Dsui_1280 at 1342.513 kb on - strand, within Dsui_1280 at 1342.514 kb on - strand, within Dsui_1280 at 1342.514 kb on - strand, within Dsui_1280 at 1342.516 kb on + strand, within Dsui_1280 at 1342.521 kb on + strand, within Dsui_1280 at 1342.560 kb on + strand, within Dsui_1280 at 1342.560 kb on + strand, within Dsui_1280 at 1342.568 kb on - strand, within Dsui_1280 at 1342.645 kb on + strand, within Dsui_1280 at 1342.645 kb on + strand, within Dsui_1280 at 1342.716 kb on + strand at 1342.765 kb on + strand at 1342.814 kb on - strand at 1342.814 kb on - strand at 1342.871 kb on - strand at 1342.892 kb on - strand at 1342.894 kb on + strand at 1342.902 kb on - strand at 1342.948 kb on - strand at 1343.007 kb on - strand at 1343.050 kb on + strand at 1343.050 kb on + strand at 1343.050 kb on + strand at 1343.050 kb on + strand at 1343.058 kb on - strand at 1343.058 kb on - strand at 1343.058 kb on - strand at 1343.058 kb on - strand at 1343.058 kb on - strand at 1343.058 kb on - strand at 1343.058 kb on - strand at 1343.068 kb on - strand at 1343.112 kb on - strand at 1343.152 kb on - strand at 1343.223 kb on - strand at 1343.308 kb on + strand at 1343.314 kb on + strand at 1343.344 kb on + strand at 1343.357 kb on - strand at 1343.359 kb on + strand at 1343.359 kb on + strand at 1343.359 kb on + strand at 1343.359 kb on + strand at 1343.366 kb on - strand at 1343.367 kb on - strand at 1343.367 kb on - strand at 1343.367 kb on - strand at 1343.367 kb on - strand at 1343.418 kb on + strand, within Dsui_1281 at 1343.471 kb on - strand, within Dsui_1281 at 1343.481 kb on - strand, within Dsui_1281 at 1343.507 kb on + strand, within Dsui_1281 at 1343.507 kb on + strand, within Dsui_1281 at 1343.541 kb on + strand, within Dsui_1281 at 1343.541 kb on + strand, within Dsui_1281 at 1343.559 kb on - strand, within Dsui_1281 at 1343.571 kb on - strand, within Dsui_1281 at 1343.593 kb on - strand, within Dsui_1281 at 1343.801 kb on - strand, within Dsui_1281 at 1343.809 kb on + strand, within Dsui_1281 at 1343.852 kb on + strand at 1343.852 kb on + strand at 1343.910 kb on + strand at 1343.911 kb on + strand at 1343.911 kb on + strand at 1343.919 kb on - strand at 1343.919 kb on - strand at 1343.919 kb on - strand at 1343.921 kb on + strand at 1343.921 kb on + strand at 1343.928 kb on - strand at 1343.929 kb on - strand at 1343.983 kb on - strand, within Dsui_1282 at 1344.088 kb on - strand, within Dsui_1282 at 1344.088 kb on - strand, within Dsui_1282 at 1344.127 kb on - strand, within Dsui_1282 at 1344.152 kb on - strand, within Dsui_1282 at 1344.199 kb on - strand, within Dsui_1282 at 1344.201 kb on + strand, within Dsui_1282 at 1344.258 kb on - strand, within Dsui_1282 at 1344.283 kb on - strand, within Dsui_1282 at 1344.285 kb on - strand, within Dsui_1282 at 1344.285 kb on - strand, within Dsui_1282 at 1344.402 kb on + strand at 1344.435 kb on - strand, within Dsui_1283 at 1344.696 kb on + strand, within Dsui_1283 at 1344.696 kb on + strand, within Dsui_1283 at 1344.731 kb on + strand, within Dsui_1283 at 1344.739 kb on - strand, within Dsui_1283 at 1344.739 kb on - strand, within Dsui_1283 at 1344.775 kb on - strand, within Dsui_1283 at 1344.779 kb on + strand, within Dsui_1283 at 1344.792 kb on - strand at 1344.820 kb on - strand at 1344.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,342,377 - Dsui_1280 0.66 -1.0 1,342,411 + Dsui_1280 0.69 +0.2 1,342,416 + Dsui_1280 0.70 -0.9 1,342,427 + Dsui_1280 0.70 +0.6 1,342,435 + Dsui_1280 0.71 +0.6 1,342,435 + Dsui_1280 0.71 +0.8 1,342,450 + Dsui_1280 0.72 +0.6 1,342,450 + Dsui_1280 0.72 +0.7 1,342,450 + Dsui_1280 0.72 +0.7 1,342,458 - Dsui_1280 0.73 -1.4 1,342,468 - Dsui_1280 0.74 +0.6 1,342,505 + Dsui_1280 0.77 +1.0 1,342,505 + Dsui_1280 0.77 +1.3 1,342,513 - Dsui_1280 0.77 +1.6 1,342,513 - Dsui_1280 0.77 -1.7 1,342,513 - Dsui_1280 0.77 +0.6 1,342,514 - Dsui_1280 0.78 +0.6 1,342,514 - Dsui_1280 0.78 +0.6 1,342,516 + Dsui_1280 0.78 +0.4 1,342,521 + Dsui_1280 0.78 +0.7 1,342,560 + Dsui_1280 0.81 +0.7 1,342,560 + Dsui_1280 0.81 +0.3 1,342,568 - Dsui_1280 0.82 -2.0 1,342,645 + Dsui_1280 0.88 +0.8 1,342,645 + Dsui_1280 0.88 +0.6 1,342,716 + +0.7 1,342,765 + +0.4 1,342,814 - +0.6 1,342,814 - -1.4 1,342,871 - +0.6 1,342,892 - -2.2 1,342,894 + -0.4 1,342,902 - -2.7 1,342,948 - -2.6 1,343,007 - -1.0 1,343,050 + -0.8 1,343,050 + -0.2 1,343,050 + -0.2 1,343,050 + +0.0 1,343,058 - -1.0 1,343,058 - +0.6 1,343,058 - +0.6 1,343,058 - +0.6 1,343,058 - -1.4 1,343,058 - +0.6 1,343,058 - +0.6 1,343,068 - +0.6 1,343,112 - -1.0 1,343,152 - -0.4 1,343,223 - +0.6 1,343,308 + +0.2 1,343,314 + +0.4 1,343,344 + +0.5 1,343,357 - -2.4 1,343,359 + +0.3 1,343,359 + +0.4 1,343,359 + +0.6 1,343,359 + +0.8 1,343,366 - -1.0 1,343,367 - +0.6 1,343,367 - -2.0 1,343,367 - +0.6 1,343,367 - +0.6 1,343,418 + Dsui_1281 0.16 +0.4 1,343,471 - Dsui_1281 0.26 +0.6 1,343,481 - Dsui_1281 0.28 +0.6 1,343,507 + Dsui_1281 0.33 +0.5 1,343,507 + Dsui_1281 0.33 +0.3 1,343,541 + Dsui_1281 0.39 +0.3 1,343,541 + Dsui_1281 0.39 +0.5 1,343,559 - Dsui_1281 0.42 -1.0 1,343,571 - Dsui_1281 0.45 +0.6 1,343,593 - Dsui_1281 0.49 +0.6 1,343,801 - Dsui_1281 0.88 -1.4 1,343,809 + Dsui_1281 0.89 +0.0 1,343,852 + +0.4 1,343,852 + -0.0 1,343,910 + +1.0 1,343,911 + +0.9 1,343,911 + +0.6 1,343,919 - -0.4 1,343,919 - +0.6 1,343,919 - -0.4 1,343,921 + +0.8 1,343,921 + +0.5 1,343,928 - +0.6 1,343,929 - -0.4 1,343,983 - Dsui_1282 0.20 -0.4 1,344,088 - Dsui_1282 0.44 +0.6 1,344,088 - Dsui_1282 0.44 -1.0 1,344,127 - Dsui_1282 0.53 -0.4 1,344,152 - Dsui_1282 0.58 +0.6 1,344,199 - Dsui_1282 0.69 +0.6 1,344,201 + Dsui_1282 0.69 -2.6 1,344,258 - Dsui_1282 0.82 +0.6 1,344,283 - Dsui_1282 0.87 -0.4 1,344,285 - Dsui_1282 0.88 +0.6 1,344,285 - Dsui_1282 0.88 +0.6 1,344,402 + +0.8 1,344,435 - Dsui_1283 0.15 +0.6 1,344,696 + Dsui_1283 0.70 +0.5 1,344,696 + Dsui_1283 0.70 +0.9 1,344,731 + Dsui_1283 0.77 +0.5 1,344,739 - Dsui_1283 0.79 +0.6 1,344,739 - Dsui_1283 0.79 -3.3 1,344,775 - Dsui_1283 0.87 +0.0 1,344,779 + Dsui_1283 0.87 +0.9 1,344,792 - +0.6 1,344,820 - -1.4 1,344,856 + +0.2
Or see this region's nucleotide sequence