Strain Fitness in Dechlorosoma suillum PS around Dsui_1133

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1131 and Dsui_1132 are separated by 13 nucleotidesDsui_1132 and Dsui_1133 are separated by 61 nucleotidesDsui_1133 and Dsui_1134 are separated by 47 nucleotides Dsui_1131: Dsui_1131 - hypothetical protein, at 1,185,280 to 1,186,023 _1131 Dsui_1132: Dsui_1132 - hypothetical protein, at 1,186,037 to 1,186,678 _1132 Dsui_1133: Dsui_1133 - hypothetical protein, at 1,186,740 to 1,187,015 _1133 Dsui_1134: Dsui_1134 - arabinose efflux permease family protein, at 1,187,063 to 1,188,400 _1134 Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -2 -1 0 1 2at 1185.813 kb on + strand, within Dsui_1131at 1185.824 kb on + strand, within Dsui_1131at 1185.845 kb on + strand, within Dsui_1131at 1185.928 kb on + strand, within Dsui_1131at 1185.951 kb on - strandat 1185.992 kb on + strandat 1186.030 kb on - strandat 1186.034 kb on + strandat 1186.047 kb on - strandat 1186.071 kb on - strandat 1186.081 kb on + strandat 1186.081 kb on + strandat 1186.081 kb on + strandat 1186.089 kb on - strandat 1186.099 kb on + strandat 1186.197 kb on + strand, within Dsui_1132at 1186.197 kb on + strand, within Dsui_1132at 1186.205 kb on - strand, within Dsui_1132at 1186.205 kb on - strand, within Dsui_1132at 1186.242 kb on + strand, within Dsui_1132at 1186.266 kb on + strand, within Dsui_1132at 1186.374 kb on + strand, within Dsui_1132at 1186.380 kb on + strand, within Dsui_1132at 1186.411 kb on + strand, within Dsui_1132at 1186.412 kb on - strand, within Dsui_1132at 1186.431 kb on - strand, within Dsui_1132at 1186.489 kb on - strand, within Dsui_1132at 1186.491 kb on + strand, within Dsui_1132at 1186.549 kb on - strand, within Dsui_1132at 1186.549 kb on - strand, within Dsui_1132at 1186.549 kb on - strand, within Dsui_1132at 1186.584 kb on - strand, within Dsui_1132at 1186.609 kb on + strand, within Dsui_1132at 1186.631 kb on + strandat 1186.674 kb on - strandat 1186.737 kb on + strandat 1186.742 kb on - strandat 1186.747 kb on - strandat 1186.833 kb on + strand, within Dsui_1133at 1186.833 kb on + strand, within Dsui_1133at 1186.886 kb on - strand, within Dsui_1133at 1186.935 kb on + strand, within Dsui_1133at 1186.965 kb on + strand, within Dsui_1133at 1187.018 kb on + strandat 1187.024 kb on - strandat 1187.039 kb on + strandat 1187.096 kb on - strandat 1187.146 kb on - strandat 1187.206 kb on - strand, within Dsui_1134at 1187.281 kb on + strand, within Dsui_1134at 1187.301 kb on + strand, within Dsui_1134at 1187.314 kb on - strand, within Dsui_1134at 1187.391 kb on - strand, within Dsui_1134at 1187.393 kb on + strand, within Dsui_1134at 1187.393 kb on + strand, within Dsui_1134at 1187.403 kb on + strand, within Dsui_1134at 1187.412 kb on + strand, within Dsui_1134at 1187.575 kb on - strand, within Dsui_1134at 1187.672 kb on + strand, within Dsui_1134at 1187.708 kb on - strand, within Dsui_1134at 1187.708 kb on - strand, within Dsui_1134at 1187.728 kb on + strand, within Dsui_1134at 1187.744 kb on + strand, within Dsui_1134at 1187.780 kb on - strand, within Dsui_1134at 1187.780 kb on - strand, within Dsui_1134at 1187.800 kb on - strand, within Dsui_1134at 1187.826 kb on - strand, within Dsui_1134at 1187.869 kb on - strand, within Dsui_1134at 1187.978 kb on + strand, within Dsui_1134at 1187.978 kb on + strand, within Dsui_1134at 1188.014 kb on + strand, within Dsui_1134

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,185,813 + Dsui_1131 0.72 -1.2
1,185,824 + Dsui_1131 0.73 -2.5
1,185,845 + Dsui_1131 0.76 +0.1
1,185,928 + Dsui_1131 0.87 +0.6
1,185,951 - -1.0
1,185,992 + -0.4
1,186,030 - +0.6
1,186,034 + +0.6
1,186,047 - +0.6
1,186,071 - -0.4
1,186,081 + +0.6
1,186,081 + -0.8
1,186,081 + -1.4
1,186,089 - -1.7
1,186,099 + -0.8
1,186,197 + Dsui_1132 0.25 -1.4
1,186,197 + Dsui_1132 0.25 +0.6
1,186,205 - Dsui_1132 0.26 -1.4
1,186,205 - Dsui_1132 0.26 +0.6
1,186,242 + Dsui_1132 0.32 +0.6
1,186,266 + Dsui_1132 0.36 +1.9
1,186,374 + Dsui_1132 0.52 -2.7
1,186,380 + Dsui_1132 0.53 -1.0
1,186,411 + Dsui_1132 0.58 +0.6
1,186,412 - Dsui_1132 0.58 -2.5
1,186,431 - Dsui_1132 0.61 +0.6
1,186,489 - Dsui_1132 0.70 -1.7
1,186,491 + Dsui_1132 0.71 -1.7
1,186,549 - Dsui_1132 0.80 -2.2
1,186,549 - Dsui_1132 0.80 +0.6
1,186,549 - Dsui_1132 0.80 +0.6
1,186,584 - Dsui_1132 0.85 -1.0
1,186,609 + Dsui_1132 0.89 +0.6
1,186,631 + -2.4
1,186,674 - -1.0
1,186,737 + +0.6
1,186,742 - -1.4
1,186,747 - +0.6
1,186,833 + Dsui_1133 0.34 -0.4
1,186,833 + Dsui_1133 0.34 -1.5
1,186,886 - Dsui_1133 0.53 -1.0
1,186,935 + Dsui_1133 0.71 -1.4
1,186,965 + Dsui_1133 0.82 -0.4
1,187,018 + -2.4
1,187,024 - -0.4
1,187,039 + -0.4
1,187,096 - +0.6
1,187,146 - -0.4
1,187,206 - Dsui_1134 0.11 +0.6
1,187,281 + Dsui_1134 0.16 -1.2
1,187,301 + Dsui_1134 0.18 +0.0
1,187,314 - Dsui_1134 0.19 -0.4
1,187,391 - Dsui_1134 0.25 +0.6
1,187,393 + Dsui_1134 0.25 +0.6
1,187,393 + Dsui_1134 0.25 -0.6
1,187,403 + Dsui_1134 0.25 -1.0
1,187,412 + Dsui_1134 0.26 -1.4
1,187,575 - Dsui_1134 0.38 -0.4
1,187,672 + Dsui_1134 0.46 -0.6
1,187,708 - Dsui_1134 0.48 -1.7
1,187,708 - Dsui_1134 0.48 -1.0
1,187,728 + Dsui_1134 0.50 -0.2
1,187,744 + Dsui_1134 0.51 -1.5
1,187,780 - Dsui_1134 0.54 +0.6
1,187,780 - Dsui_1134 0.54 +0.6
1,187,800 - Dsui_1134 0.55 -1.0
1,187,826 - Dsui_1134 0.57 +0.6
1,187,869 - Dsui_1134 0.60 -1.4
1,187,978 + Dsui_1134 0.68 -0.3
1,187,978 + Dsui_1134 0.68 -0.9
1,188,014 + Dsui_1134 0.71 +0.6

Or see this region's nucleotide sequence