Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0996 and Dsui_0997 are separated by 366 nucleotides Dsui_0997 and Dsui_0998 are separated by 174 nucleotides
Dsui_0996: Dsui_0996 - soluble lytic murein transglycosylase-like protein, at 1,022,272 to 1,022,979
_0996
Dsui_0997: Dsui_0997 - methyl-accepting chemotaxis protein, at 1,023,346 to 1,025,373
_0997
Dsui_0998: Dsui_0998 - A/G-specific adenine glycosylase, at 1,025,548 to 1,026,609
_0998
Position (kb)
1023
1024
1025
1026 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1022.552 kb on + strand, within Dsui_0996 at 1022.643 kb on - strand, within Dsui_0996 at 1022.701 kb on + strand, within Dsui_0996 at 1022.701 kb on + strand, within Dsui_0996 at 1022.709 kb on - strand, within Dsui_0996 at 1022.901 kb on + strand, within Dsui_0996 at 1022.906 kb on + strand, within Dsui_0996 at 1022.909 kb on - strand at 1022.919 kb on - strand at 1023.015 kb on + strand at 1023.034 kb on - strand at 1023.121 kb on + strand at 1023.131 kb on + strand at 1023.132 kb on + strand at 1023.133 kb on + strand at 1023.141 kb on - strand at 1023.232 kb on + strand at 1023.232 kb on + strand at 1023.240 kb on - strand at 1023.341 kb on - strand at 1023.352 kb on - strand at 1023.392 kb on + strand at 1023.416 kb on + strand at 1023.424 kb on - strand at 1023.494 kb on + strand at 1023.502 kb on - strand at 1023.504 kb on + strand at 1023.651 kb on - strand, within Dsui_0997 at 1023.655 kb on + strand, within Dsui_0997 at 1023.663 kb on - strand, within Dsui_0997 at 1023.725 kb on - strand, within Dsui_0997 at 1023.963 kb on + strand, within Dsui_0997 at 1024.002 kb on - strand, within Dsui_0997 at 1024.013 kb on - strand, within Dsui_0997 at 1024.163 kb on - strand, within Dsui_0997 at 1024.168 kb on + strand at 1024.225 kb on + strand, within Dsui_0997 at 1024.225 kb on + strand, within Dsui_0997 at 1024.262 kb on + strand at 1024.390 kb on + strand, within Dsui_0997 at 1024.409 kb on - strand, within Dsui_0997 at 1024.416 kb on + strand, within Dsui_0997 at 1024.416 kb on + strand, within Dsui_0997 at 1024.466 kb on + strand, within Dsui_0997 at 1024.479 kb on - strand, within Dsui_0997 at 1024.487 kb on + strand, within Dsui_0997 at 1024.505 kb on - strand at 1024.505 kb on - strand, within Dsui_0997 at 1024.522 kb on + strand, within Dsui_0997 at 1024.561 kb on - strand, within Dsui_0997 at 1024.643 kb on + strand, within Dsui_0997 at 1024.650 kb on - strand, within Dsui_0997 at 1024.675 kb on - strand, within Dsui_0997 at 1024.675 kb on - strand, within Dsui_0997 at 1024.725 kb on - strand, within Dsui_0997 at 1024.764 kb on + strand, within Dsui_0997 at 1024.780 kb on + strand, within Dsui_0997 at 1024.833 kb on - strand, within Dsui_0997 at 1024.834 kb on - strand, within Dsui_0997 at 1024.888 kb on - strand at 1024.953 kb on + strand, within Dsui_0997 at 1025.018 kb on + strand, within Dsui_0997 at 1025.032 kb on - strand, within Dsui_0997 at 1025.123 kb on + strand, within Dsui_0997 at 1025.157 kb on + strand, within Dsui_0997 at 1025.181 kb on + strand at 1025.280 kb on + strand at 1025.325 kb on - strand at 1025.419 kb on + strand at 1025.419 kb on + strand at 1025.427 kb on + strand at 1025.427 kb on - strand at 1025.432 kb on - strand at 1025.435 kb on - strand at 1025.460 kb on - strand at 1025.464 kb on + strand at 1025.464 kb on + strand at 1025.506 kb on + strand at 1025.514 kb on - strand at 1025.603 kb on + strand at 1025.728 kb on + strand, within Dsui_0998 at 1025.736 kb on - strand, within Dsui_0998 at 1025.751 kb on + strand, within Dsui_0998 at 1025.864 kb on - strand, within Dsui_0998 at 1025.954 kb on - strand, within Dsui_0998 at 1026.015 kb on + strand, within Dsui_0998 at 1026.020 kb on + strand, within Dsui_0998 at 1026.164 kb on + strand at 1026.352 kb on - strand, within Dsui_0998
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,022,552 + Dsui_0996 0.40 +0.9 1,022,643 - Dsui_0996 0.52 +0.4 1,022,701 + Dsui_0996 0.61 +1.5 1,022,701 + Dsui_0996 0.61 -2.6 1,022,709 - Dsui_0996 0.62 +0.1 1,022,901 + Dsui_0996 0.89 +0.9 1,022,906 + Dsui_0996 0.90 +2.5 1,022,909 - +0.2 1,022,919 - -0.1 1,023,015 + -0.1 1,023,034 - +0.1 1,023,121 + -1.7 1,023,131 + -1.1 1,023,132 + -1.7 1,023,133 + -1.1 1,023,141 - +0.3 1,023,232 + -0.7 1,023,232 + +0.9 1,023,240 - +0.9 1,023,341 - -2.4 1,023,352 - +1.3 1,023,392 + -1.1 1,023,416 + +0.9 1,023,424 - -0.8 1,023,494 + -1.1 1,023,502 - -0.5 1,023,504 + -0.1 1,023,651 - Dsui_0997 0.15 -0.4 1,023,655 + Dsui_0997 0.15 +0.9 1,023,663 - Dsui_0997 0.16 -2.4 1,023,725 - Dsui_0997 0.19 -0.1 1,023,963 + Dsui_0997 0.30 -0.1 1,024,002 - Dsui_0997 0.32 -0.9 1,024,013 - Dsui_0997 0.33 -0.3 1,024,163 - Dsui_0997 0.40 -0.7 1,024,168 + +0.9 1,024,225 + Dsui_0997 0.43 -1.7 1,024,225 + Dsui_0997 0.43 -1.4 1,024,262 + -0.1 1,024,390 + Dsui_0997 0.51 -0.1 1,024,409 - Dsui_0997 0.52 +0.2 1,024,416 + Dsui_0997 0.53 -3.2 1,024,416 + Dsui_0997 0.53 -0.1 1,024,466 + Dsui_0997 0.55 -0.7 1,024,479 - Dsui_0997 0.56 +0.2 1,024,487 + Dsui_0997 0.56 +0.9 1,024,505 - +0.9 1,024,505 - Dsui_0997 0.57 -0.1 1,024,522 + Dsui_0997 0.58 -1.4 1,024,561 - Dsui_0997 0.60 -1.2 1,024,643 + Dsui_0997 0.64 -1.1 1,024,650 - Dsui_0997 0.64 +0.5 1,024,675 - Dsui_0997 0.66 -0.5 1,024,675 - Dsui_0997 0.66 -1.1 1,024,725 - Dsui_0997 0.68 +0.9 1,024,764 + Dsui_0997 0.70 -0.1 1,024,780 + Dsui_0997 0.71 -3.1 1,024,833 - Dsui_0997 0.73 -1.4 1,024,834 - Dsui_0997 0.73 +2.7 1,024,888 - +0.9 1,024,953 + Dsui_0997 0.79 +0.9 1,025,018 + Dsui_0997 0.82 -1.1 1,025,032 - Dsui_0997 0.83 +1.7 1,025,123 + Dsui_0997 0.88 -0.1 1,025,157 + Dsui_0997 0.89 -0.1 1,025,181 + +0.9 1,025,280 + -0.1 1,025,325 - -0.1 1,025,419 + +0.9 1,025,419 + -0.7 1,025,427 + -0.1 1,025,427 - -0.7 1,025,432 - +1.9 1,025,435 - -0.4 1,025,460 - -0.4 1,025,464 + -0.1 1,025,464 + -1.1 1,025,506 + +0.9 1,025,514 - -1.4 1,025,603 + -1.1 1,025,728 + Dsui_0998 0.17 -0.1 1,025,736 - Dsui_0998 0.18 +0.6 1,025,751 + Dsui_0998 0.19 -0.1 1,025,864 - Dsui_0998 0.30 +1.2 1,025,954 - Dsui_0998 0.38 +0.6 1,026,015 + Dsui_0998 0.44 +0.9 1,026,020 + Dsui_0998 0.44 -0.1 1,026,164 + -0.1 1,026,352 - Dsui_0998 0.76 -1.4
Or see this region's nucleotide sequence