Strain Fitness in Dechlorosoma suillum PS around Dsui_0076

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0075 and Dsui_0076 overlap by 1 nucleotidesDsui_0076 and Dsui_0077 overlap by 4 nucleotides Dsui_0075: Dsui_0075 - hypothetical protein, at 71,910 to 72,812 _0075 Dsui_0076: Dsui_0076 - acetyltransferase, ribosomal protein N-acetylase, at 72,812 to 73,354 _0076 Dsui_0077: Dsui_0077 - putative PLP-dependent enzyme possibly involved in cell wall biogenesis, at 73,351 to 74,643 _0077 Position (kb) 72 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 71.856 kb on + strandat 71.856 kb on + strandat 71.856 kb on + strandat 71.856 kb on + strandat 71.856 kb on + strandat 71.864 kb on - strandat 71.864 kb on - strandat 71.864 kb on - strandat 71.864 kb on - strandat 71.864 kb on - strandat 71.864 kb on - strandat 71.886 kb on + strandat 71.886 kb on + strandat 71.887 kb on + strandat 71.887 kb on + strandat 71.894 kb on - strandat 71.894 kb on - strandat 71.913 kb on + strandat 71.970 kb on - strandat 71.970 kb on - strandat 72.032 kb on - strand, within Dsui_0075at 72.039 kb on - strand, within Dsui_0075at 72.051 kb on + strand, within Dsui_0075at 72.051 kb on + strand, within Dsui_0075at 72.051 kb on + strand, within Dsui_0075at 72.051 kb on + strand, within Dsui_0075at 72.051 kb on + strand, within Dsui_0075at 72.051 kb on + strand, within Dsui_0075at 72.052 kb on - strand, within Dsui_0075at 72.059 kb on - strand, within Dsui_0075at 72.059 kb on - strand, within Dsui_0075at 72.060 kb on - strand, within Dsui_0075at 72.111 kb on + strand, within Dsui_0075at 72.119 kb on - strand, within Dsui_0075at 72.119 kb on - strand, within Dsui_0075at 72.203 kb on - strand, within Dsui_0075at 72.206 kb on + strand, within Dsui_0075at 72.209 kb on - strand, within Dsui_0075at 72.209 kb on - strand, within Dsui_0075at 72.218 kb on - strand, within Dsui_0075at 72.222 kb on - strand, within Dsui_0075at 72.256 kb on + strand, within Dsui_0075at 72.256 kb on + strand, within Dsui_0075at 72.295 kb on + strand, within Dsui_0075at 72.304 kb on + strand, within Dsui_0075at 72.371 kb on - strand, within Dsui_0075at 72.376 kb on + strand, within Dsui_0075at 72.376 kb on + strand, within Dsui_0075at 72.441 kb on + strand, within Dsui_0075at 72.442 kb on + strand, within Dsui_0075at 72.442 kb on + strand, within Dsui_0075at 72.467 kb on - strand, within Dsui_0075at 72.473 kb on - strand, within Dsui_0075at 72.476 kb on + strand, within Dsui_0075at 72.496 kb on + strand, within Dsui_0075at 72.498 kb on + strand, within Dsui_0075at 72.498 kb on + strand, within Dsui_0075at 72.504 kb on - strand, within Dsui_0075at 72.508 kb on - strand, within Dsui_0075at 72.565 kb on + strand, within Dsui_0075at 72.573 kb on - strand, within Dsui_0075at 72.612 kb on + strand, within Dsui_0075at 72.643 kb on + strand, within Dsui_0075at 72.648 kb on + strand, within Dsui_0075at 72.648 kb on + strand, within Dsui_0075at 72.651 kb on - strand, within Dsui_0075at 72.656 kb on - strand, within Dsui_0075at 72.656 kb on - strand, within Dsui_0075at 72.690 kb on - strand, within Dsui_0075at 72.728 kb on - strandat 72.738 kb on - strandat 72.765 kb on + strandat 72.773 kb on + strandat 72.840 kb on + strandat 72.840 kb on + strandat 72.840 kb on + strandat 72.840 kb on + strandat 72.843 kb on - strandat 72.848 kb on - strandat 72.848 kb on - strandat 72.848 kb on - strandat 72.865 kb on + strandat 72.865 kb on + strandat 72.865 kb on + strandat 72.873 kb on - strand, within Dsui_0076at 72.895 kb on - strand, within Dsui_0076at 72.897 kb on + strand, within Dsui_0076at 72.918 kb on - strand, within Dsui_0076at 72.918 kb on - strand, within Dsui_0076at 72.934 kb on + strand, within Dsui_0076at 72.937 kb on - strand, within Dsui_0076at 72.991 kb on + strand, within Dsui_0076at 73.038 kb on - strand, within Dsui_0076at 73.053 kb on - strand, within Dsui_0076at 73.076 kb on - strand, within Dsui_0076at 73.081 kb on - strand, within Dsui_0076at 73.131 kb on - strand, within Dsui_0076at 73.131 kb on - strand, within Dsui_0076at 73.164 kb on + strand, within Dsui_0076at 73.164 kb on + strand, within Dsui_0076at 73.172 kb on - strand, within Dsui_0076at 73.185 kb on - strand, within Dsui_0076at 73.190 kb on - strand, within Dsui_0076at 73.194 kb on - strand, within Dsui_0076at 73.285 kb on + strand, within Dsui_0076at 73.287 kb on - strand, within Dsui_0076at 73.293 kb on - strand, within Dsui_0076at 73.293 kb on - strand, within Dsui_0076at 73.295 kb on + strand, within Dsui_0076at 73.303 kb on - strandat 73.313 kb on - strandat 73.370 kb on - strandat 73.373 kb on + strandat 73.376 kb on - strandat 73.381 kb on - strandat 73.381 kb on - strandat 73.381 kb on - strandat 73.381 kb on - strandat 73.425 kb on + strandat 73.435 kb on + strandat 73.501 kb on - strand, within Dsui_0077at 73.509 kb on + strand, within Dsui_0077at 73.532 kb on + strand, within Dsui_0077at 73.532 kb on + strand, within Dsui_0077at 73.545 kb on - strand, within Dsui_0077at 73.593 kb on - strand, within Dsui_0077at 73.618 kb on + strand, within Dsui_0077at 73.639 kb on + strand, within Dsui_0077at 73.642 kb on - strand, within Dsui_0077at 73.674 kb on + strand, within Dsui_0077at 73.681 kb on + strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.697 kb on - strand, within Dsui_0077at 73.710 kb on + strand, within Dsui_0077at 73.731 kb on + strand, within Dsui_0077at 73.739 kb on - strand, within Dsui_0077at 73.739 kb on - strand, within Dsui_0077at 73.739 kb on - strand, within Dsui_0077at 73.798 kb on + strand, within Dsui_0077at 73.812 kb on + strand, within Dsui_0077at 73.812 kb on + strand, within Dsui_0077at 73.830 kb on + strand, within Dsui_0077at 73.840 kb on - strand, within Dsui_0077at 73.844 kb on - strand, within Dsui_0077at 73.878 kb on - strand, within Dsui_0077at 73.901 kb on - strand, within Dsui_0077at 73.915 kb on + strand, within Dsui_0077at 73.944 kb on + strand, within Dsui_0077at 73.990 kb on + strand, within Dsui_0077at 74.000 kb on + strand, within Dsui_0077at 74.006 kb on + strand, within Dsui_0077at 74.008 kb on - strand, within Dsui_0077at 74.008 kb on - strand, within Dsui_0077at 74.019 kb on + strand, within Dsui_0077at 74.033 kb on - strand, within Dsui_0077at 74.057 kb on - strand, within Dsui_0077at 74.086 kb on + strand, within Dsui_0077at 74.094 kb on - strand, within Dsui_0077at 74.110 kb on - strand, within Dsui_0077at 74.128 kb on + strand, within Dsui_0077at 74.136 kb on - strand, within Dsui_0077at 74.140 kb on - strand, within Dsui_0077at 74.188 kb on - strand, within Dsui_0077at 74.189 kb on + strand, within Dsui_0077at 74.194 kb on + strand, within Dsui_0077at 74.194 kb on + strand, within Dsui_0077at 74.197 kb on - strand, within Dsui_0077at 74.202 kb on - strand, within Dsui_0077at 74.206 kb on + strand, within Dsui_0077at 74.222 kb on + strand, within Dsui_0077at 74.229 kb on + strand, within Dsui_0077at 74.242 kb on + strand, within Dsui_0077at 74.243 kb on - strand, within Dsui_0077at 74.274 kb on + strand, within Dsui_0077at 74.284 kb on + strand, within Dsui_0077at 74.284 kb on - strand, within Dsui_0077at 74.294 kb on + strand, within Dsui_0077at 74.297 kb on - strand, within Dsui_0077at 74.301 kb on + strand, within Dsui_0077

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
71,856 + -0.9
71,856 + +0.7
71,856 + -0.9
71,856 + +0.7
71,856 + -2.3
71,864 - +1.1
71,864 - +1.0
71,864 - +1.2
71,864 - +1.0
71,864 - +0.9
71,864 - +0.8
71,886 + -1.6
71,886 + -0.3
71,887 + -1.3
71,887 + +0.7
71,894 - +0.5
71,894 - +0.8
71,913 + -1.6
71,970 - +0.7
71,970 - +0.8
72,032 - Dsui_0075 0.14 +0.8
72,039 - Dsui_0075 0.14 +0.8
72,051 + Dsui_0075 0.16 +0.7
72,051 + Dsui_0075 0.16 -0.9
72,051 + Dsui_0075 0.16 -2.3
72,051 + Dsui_0075 0.16 +0.7
72,051 + Dsui_0075 0.16 +0.7
72,051 + Dsui_0075 0.16 -0.9
72,052 - Dsui_0075 0.16 +0.3
72,059 - Dsui_0075 0.17 +0.2
72,059 - Dsui_0075 0.17 +0.6
72,060 - Dsui_0075 0.17 +0.7
72,111 + Dsui_0075 0.22 -0.6
72,119 - Dsui_0075 0.23 +0.7
72,119 - Dsui_0075 0.23 +0.7
72,203 - Dsui_0075 0.32 +0.8
72,206 + Dsui_0075 0.33 -0.3
72,209 - Dsui_0075 0.33 +0.5
72,209 - Dsui_0075 0.33 +0.7
72,218 - Dsui_0075 0.34 +0.6
72,222 - Dsui_0075 0.35 +0.6
72,256 + Dsui_0075 0.38 -2.1
72,256 + Dsui_0075 0.38 -1.3
72,295 + Dsui_0075 0.43 -0.9
72,304 + Dsui_0075 0.44 +0.7
72,371 - Dsui_0075 0.51 +0.9
72,376 + Dsui_0075 0.52 +0.7
72,376 + Dsui_0075 0.52 +0.7
72,441 + Dsui_0075 0.59 -0.9
72,442 + Dsui_0075 0.59 -0.3
72,442 + Dsui_0075 0.59 -0.9
72,467 - Dsui_0075 0.62 +0.8
72,473 - Dsui_0075 0.62 +1.1
72,476 + Dsui_0075 0.63 -0.3
72,496 + Dsui_0075 0.65 -1.3
72,498 + Dsui_0075 0.65 +0.7
72,498 + Dsui_0075 0.65 +0.7
72,504 - Dsui_0075 0.66 +0.5
72,508 - Dsui_0075 0.66 +0.8
72,565 + Dsui_0075 0.73 -2.3
72,573 - Dsui_0075 0.73 +0.5
72,612 + Dsui_0075 0.78 -0.9
72,643 + Dsui_0075 0.81 +0.7
72,648 + Dsui_0075 0.82 +0.7
72,648 + Dsui_0075 0.82 -2.1
72,651 - Dsui_0075 0.82 +0.7
72,656 - Dsui_0075 0.83 +0.8
72,656 - Dsui_0075 0.83 +0.6
72,690 - Dsui_0075 0.86 +1.0
72,728 - +0.8
72,738 - +0.7
72,765 + -0.9
72,773 + -0.3
72,840 + -0.3
72,840 + -0.3
72,840 + +0.7
72,840 + -0.9
72,843 - +0.2
72,848 - -0.0
72,848 - -0.1
72,848 - +0.2
72,865 + +0.7
72,865 + +0.7
72,865 + -1.3
72,873 - Dsui_0076 0.11 +0.9
72,895 - Dsui_0076 0.15 +1.0
72,897 + Dsui_0076 0.16 +0.7
72,918 - Dsui_0076 0.20 +0.5
72,918 - Dsui_0076 0.20 +0.7
72,934 + Dsui_0076 0.22 +0.7
72,937 - Dsui_0076 0.23 +0.9
72,991 + Dsui_0076 0.33 +0.7
73,038 - Dsui_0076 0.42 +0.9
73,053 - Dsui_0076 0.44 +0.5
73,076 - Dsui_0076 0.49 +1.0
73,081 - Dsui_0076 0.50 +0.9
73,131 - Dsui_0076 0.59 +1.0
73,131 - Dsui_0076 0.59 +0.6
73,164 + Dsui_0076 0.65 +0.7
73,164 + Dsui_0076 0.65 -0.3
73,172 - Dsui_0076 0.66 +0.7
73,185 - Dsui_0076 0.69 +0.8
73,190 - Dsui_0076 0.70 +0.7
73,194 - Dsui_0076 0.70 +0.8
73,285 + Dsui_0076 0.87 +0.7
73,287 - Dsui_0076 0.87 +1.4
73,293 - Dsui_0076 0.89 +0.8
73,293 - Dsui_0076 0.89 +0.9
73,295 + Dsui_0076 0.89 +0.7
73,303 - +1.0
73,313 - +0.9
73,370 - -0.1
73,373 + -0.3
73,376 - +0.6
73,381 - +0.6
73,381 - +0.3
73,381 - +0.6
73,381 - +0.5
73,425 + +0.7
73,435 + +0.7
73,501 - Dsui_0077 0.12 +0.7
73,509 + Dsui_0077 0.12 -3.2
73,532 + Dsui_0077 0.14 -0.9
73,532 + Dsui_0077 0.14 -2.1
73,545 - Dsui_0077 0.15 +0.7
73,593 - Dsui_0077 0.19 +1.0
73,618 + Dsui_0077 0.21 -0.3
73,639 + Dsui_0077 0.22 +0.7
73,642 - Dsui_0077 0.23 +0.4
73,674 + Dsui_0077 0.25 -0.9
73,681 + Dsui_0077 0.26 -0.9
73,689 - Dsui_0077 0.26 +2.0
73,689 - Dsui_0077 0.26 +0.7
73,689 - Dsui_0077 0.26 +0.5
73,689 - Dsui_0077 0.26 +0.4
73,697 - Dsui_0077 0.27 +0.7
73,710 + Dsui_0077 0.28 -2.5
73,731 + Dsui_0077 0.29 +0.7
73,739 - Dsui_0077 0.30 +1.0
73,739 - Dsui_0077 0.30 +0.7
73,739 - Dsui_0077 0.30 +1.0
73,798 + Dsui_0077 0.35 -1.3
73,812 + Dsui_0077 0.36 -2.9
73,812 + Dsui_0077 0.36 -1.6
73,830 + Dsui_0077 0.37 -3.1
73,840 - Dsui_0077 0.38 +1.0
73,844 - Dsui_0077 0.38 +0.9
73,878 - Dsui_0077 0.41 +0.3
73,901 - Dsui_0077 0.43 +0.7
73,915 + Dsui_0077 0.44 +0.7
73,944 + Dsui_0077 0.46 +0.7
73,990 + Dsui_0077 0.49 -0.3
74,000 + Dsui_0077 0.50 +0.7
74,006 + Dsui_0077 0.51 -0.3
74,008 - Dsui_0077 0.51 +1.1
74,008 - Dsui_0077 0.51 +0.8
74,019 + Dsui_0077 0.52 +0.7
74,033 - Dsui_0077 0.53 +0.8
74,057 - Dsui_0077 0.55 +0.7
74,086 + Dsui_0077 0.57 -0.3
74,094 - Dsui_0077 0.57 +0.9
74,110 - Dsui_0077 0.59 +0.7
74,128 + Dsui_0077 0.60 +0.7
74,136 - Dsui_0077 0.61 +0.8
74,140 - Dsui_0077 0.61 +1.0
74,188 - Dsui_0077 0.65 +0.8
74,189 + Dsui_0077 0.65 +0.7
74,194 + Dsui_0077 0.65 -2.5
74,194 + Dsui_0077 0.65 +0.7
74,197 - Dsui_0077 0.65 +0.6
74,202 - Dsui_0077 0.66 +1.0
74,206 + Dsui_0077 0.66 -1.3
74,222 + Dsui_0077 0.67 -0.9
74,229 + Dsui_0077 0.68 -0.3
74,242 + Dsui_0077 0.69 +0.7
74,243 - Dsui_0077 0.69 +1.6
74,274 + Dsui_0077 0.71 -1.9
74,284 + Dsui_0077 0.72 +0.7
74,284 - Dsui_0077 0.72 +1.0
74,294 + Dsui_0077 0.73 +0.7
74,297 - Dsui_0077 0.73 +0.8
74,301 + Dsui_0077 0.73 -0.3

Or see this region's nucleotide sequence