Experiment: PYE 0.5x 30C survival rep1 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03798 and CCNA_03799 overlap by 4 nucleotides CCNA_03799 and CCNA_03800 overlap by 88 nucleotides CCNA_03800 and CCNA_03801 are separated by 14 nucleotides
CCNA_03798: CCNA_03798 - tRNA 2-methylthioadenosine synthase-like protein, at 3,961,164 to 3,962,495
_03798
CCNA_03799: CCNA_03799 - short chain dehydrogenase, at 3,962,492 to 3,963,415
_03799
CCNA_03800: CCNA_03800 - diaminopimelate epimerase, at 3,963,328 to 3,964,194
_03800
CCNA_03801: CCNA_03801 - prolyl endopeptidase family, at 3,964,209 to 3,966,470
_03801
Position (kb)
3962
3963
3964 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3962.470 kb on + strand at 3962.596 kb on - strand, within CCNA_03799 at 3962.602 kb on - strand, within CCNA_03799 at 3962.603 kb on - strand, within CCNA_03799 at 3962.660 kb on - strand, within CCNA_03799 at 3962.690 kb on - strand, within CCNA_03799 at 3962.795 kb on - strand, within CCNA_03799 at 3962.808 kb on + strand, within CCNA_03799 at 3962.820 kb on + strand, within CCNA_03799 at 3962.927 kb on - strand, within CCNA_03799 at 3962.976 kb on + strand, within CCNA_03799 at 3962.984 kb on - strand, within CCNA_03799 at 3962.998 kb on - strand, within CCNA_03799 at 3963.040 kb on - strand, within CCNA_03799 at 3963.118 kb on - strand, within CCNA_03799 at 3963.326 kb on - strand at 3963.363 kb on + strand at 3963.386 kb on - strand at 3964.189 kb on + strand at 3964.204 kb on + strand at 3964.207 kb on - strand at 3964.256 kb on - strand at 3964.271 kb on - strand at 3964.281 kb on + strand at 3964.281 kb on + strand at 3964.281 kb on + strand at 3964.289 kb on - strand at 3964.289 kb on - strand at 3964.291 kb on + strand at 3964.321 kb on + strand at 3964.332 kb on + strand at 3964.346 kb on - strand at 3964.371 kb on + strand at 3964.394 kb on - strand at 3964.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep1 12 days remove 3,962,470 + +0.4 3,962,596 - CCNA_03799 0.11 +1.2 3,962,602 - CCNA_03799 0.12 +0.3 3,962,603 - CCNA_03799 0.12 +1.3 3,962,660 - CCNA_03799 0.18 +1.1 3,962,690 - CCNA_03799 0.21 +0.2 3,962,795 - CCNA_03799 0.33 +1.8 3,962,808 + CCNA_03799 0.34 +1.7 3,962,820 + CCNA_03799 0.35 +0.2 3,962,927 - CCNA_03799 0.47 +0.4 3,962,976 + CCNA_03799 0.52 -0.1 3,962,984 - CCNA_03799 0.53 +1.2 3,962,998 - CCNA_03799 0.55 -1.8 3,963,040 - CCNA_03799 0.59 +0.2 3,963,118 - CCNA_03799 0.68 -0.1 3,963,326 - +0.6 3,963,363 + -0.6 3,963,386 - -0.2 3,964,189 + -0.6 3,964,204 + +0.5 3,964,207 - -2.0 3,964,256 - -2.2 3,964,271 - +2.2 3,964,281 + -2.1 3,964,281 + -1.1 3,964,281 + +0.9 3,964,289 - +0.9 3,964,289 - -0.1 3,964,291 + +2.2 3,964,321 + +0.5 3,964,332 + -0.1 3,964,346 - -1.0 3,964,371 + -0.4 3,964,394 - -1.1 3,964,394 - -0.6
Or see this region's nucleotide sequence