Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03769

Experiment: PYE 0.5x 30C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03768 and CCNA_03769 are separated by 341 nucleotidesCCNA_03769 and CCNA_03770 are separated by 131 nucleotides CCNA_03768: CCNA_03768 - signal recognition particle GTPase, SRP, at 3,935,365 to 3,936,891 _03768 CCNA_03769: CCNA_03769 - hypothetical protein, at 3,937,233 to 3,937,739 _03769 CCNA_03770: CCNA_03770 - malate dehydrogenase, at 3,937,871 to 3,938,833 _03770 Position (kb) 3937 3938Strain fitness (log2 ratio) -2 -1 0 1at 3937.075 kb on + strandat 3937.083 kb on - strandat 3937.083 kb on - strandat 3937.090 kb on + strandat 3937.099 kb on - strandat 3937.139 kb on + strandat 3937.139 kb on + strandat 3937.153 kb on + strandat 3937.153 kb on + strandat 3937.161 kb on - strandat 3937.188 kb on + strandat 3937.196 kb on - strandat 3937.196 kb on - strandat 3937.231 kb on + strandat 3937.238 kb on - strandat 3937.239 kb on - strandat 3937.239 kb on - strandat 3937.265 kb on + strandat 3937.289 kb on - strand, within CCNA_03769at 3937.310 kb on - strand, within CCNA_03769at 3937.314 kb on + strand, within CCNA_03769at 3937.337 kb on - strand, within CCNA_03769at 3937.337 kb on - strand, within CCNA_03769at 3937.347 kb on + strand, within CCNA_03769at 3937.354 kb on + strand, within CCNA_03769at 3937.354 kb on + strand, within CCNA_03769at 3937.362 kb on - strand, within CCNA_03769at 3937.362 kb on - strand, within CCNA_03769at 3937.362 kb on - strand, within CCNA_03769at 3937.364 kb on + strand, within CCNA_03769at 3937.382 kb on + strand, within CCNA_03769at 3937.403 kb on + strand, within CCNA_03769at 3937.403 kb on + strand, within CCNA_03769at 3937.435 kb on - strand, within CCNA_03769at 3937.436 kb on - strand, within CCNA_03769at 3937.442 kb on - strand, within CCNA_03769at 3937.449 kb on - strand, within CCNA_03769at 3937.492 kb on - strand, within CCNA_03769at 3937.514 kb on + strand, within CCNA_03769at 3937.524 kb on + strand, within CCNA_03769at 3937.529 kb on + strand, within CCNA_03769at 3937.537 kb on + strand, within CCNA_03769at 3937.545 kb on - strand, within CCNA_03769at 3937.597 kb on + strand, within CCNA_03769at 3937.605 kb on - strand, within CCNA_03769at 3937.605 kb on - strand, within CCNA_03769at 3937.605 kb on - strand, within CCNA_03769at 3937.605 kb on - strand, within CCNA_03769at 3937.605 kb on - strand, within CCNA_03769at 3937.617 kb on - strand, within CCNA_03769at 3937.617 kb on - strand, within CCNA_03769at 3937.642 kb on + strand, within CCNA_03769at 3937.650 kb on - strand, within CCNA_03769at 3937.650 kb on - strand, within CCNA_03769at 3937.650 kb on - strand, within CCNA_03769at 3937.660 kb on + strand, within CCNA_03769at 3937.668 kb on - strand, within CCNA_03769at 3937.668 kb on - strand, within CCNA_03769at 3937.675 kb on + strand, within CCNA_03769at 3937.677 kb on + strand, within CCNA_03769at 3937.677 kb on + strand, within CCNA_03769at 3937.677 kb on + strand, within CCNA_03769at 3937.677 kb on + strand, within CCNA_03769at 3937.685 kb on - strand, within CCNA_03769at 3937.685 kb on - strand, within CCNA_03769at 3937.716 kb on + strandat 3937.730 kb on - strandat 3937.734 kb on + strandat 3937.742 kb on - strandat 3937.774 kb on + strandat 3937.775 kb on - strandat 3937.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep1 12 days
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3,937,075 + -0.2
3,937,083 - +0.7
3,937,083 - +0.7
3,937,090 + -0.6
3,937,099 - +1.0
3,937,139 + -1.3
3,937,139 + -0.4
3,937,153 + -0.3
3,937,153 + +0.1
3,937,161 - +0.3
3,937,188 + -0.2
3,937,196 - -1.1
3,937,196 - +1.1
3,937,231 + -1.1
3,937,238 - +0.2
3,937,239 - +1.1
3,937,239 - -0.7
3,937,265 + +0.6
3,937,289 - CCNA_03769 0.11 +0.3
3,937,310 - CCNA_03769 0.15 +0.6
3,937,314 + CCNA_03769 0.16 -2.1
3,937,337 - CCNA_03769 0.21 +0.4
3,937,337 - CCNA_03769 0.21 +0.1
3,937,347 + CCNA_03769 0.22 -0.5
3,937,354 + CCNA_03769 0.24 +0.6
3,937,354 + CCNA_03769 0.24 -0.2
3,937,362 - CCNA_03769 0.25 -0.3
3,937,362 - CCNA_03769 0.25 +0.4
3,937,362 - CCNA_03769 0.25 +0.7
3,937,364 + CCNA_03769 0.26 +1.0
3,937,382 + CCNA_03769 0.29 +1.0
3,937,403 + CCNA_03769 0.34 -0.6
3,937,403 + CCNA_03769 0.34 -1.3
3,937,435 - CCNA_03769 0.40 -0.0
3,937,436 - CCNA_03769 0.40 -0.2
3,937,442 - CCNA_03769 0.41 +0.5
3,937,449 - CCNA_03769 0.43 +0.6
3,937,492 - CCNA_03769 0.51 -0.5
3,937,514 + CCNA_03769 0.55 +0.1
3,937,524 + CCNA_03769 0.57 +0.5
3,937,529 + CCNA_03769 0.58 -0.2
3,937,537 + CCNA_03769 0.60 +1.1
3,937,545 - CCNA_03769 0.62 -0.3
3,937,597 + CCNA_03769 0.72 +1.4
3,937,605 - CCNA_03769 0.73 -1.2
3,937,605 - CCNA_03769 0.73 +0.1
3,937,605 - CCNA_03769 0.73 +0.4
3,937,605 - CCNA_03769 0.73 -0.5
3,937,605 - CCNA_03769 0.73 -0.5
3,937,617 - CCNA_03769 0.76 +0.4
3,937,617 - CCNA_03769 0.76 -0.8
3,937,642 + CCNA_03769 0.81 -0.5
3,937,650 - CCNA_03769 0.82 +0.1
3,937,650 - CCNA_03769 0.82 +0.4
3,937,650 - CCNA_03769 0.82 +0.3
3,937,660 + CCNA_03769 0.84 -0.5
3,937,668 - CCNA_03769 0.86 -1.0
3,937,668 - CCNA_03769 0.86 -0.8
3,937,675 + CCNA_03769 0.87 -0.3
3,937,677 + CCNA_03769 0.88 -1.7
3,937,677 + CCNA_03769 0.88 +0.9
3,937,677 + CCNA_03769 0.88 +1.2
3,937,677 + CCNA_03769 0.88 +0.0
3,937,685 - CCNA_03769 0.89 -0.8
3,937,685 - CCNA_03769 0.89 -0.5
3,937,716 + -0.6
3,937,730 - -0.3
3,937,734 + -0.0
3,937,742 - +0.2
3,937,774 + +0.1
3,937,775 - +0.2
3,937,804 - +0.4

Or see this region's nucleotide sequence