Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03004

Experiment: PYE 0.5x 30C survival rep1 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep1 12 days
3,157,164	+		CCNA_03003	0.41	+0.0
3,157,167	-		CCNA_03003	0.41	-0.6
3,157,172	-		CCNA_03003	0.41	+1.4
3,157,172	-		CCNA_03003	0.41	-1.2
3,157,172	-		CCNA_03003	0.41	+2.4
3,157,250	-		CCNA_03003	0.46	-0.0
3,157,252	+		CCNA_03003	0.46	-0.2
3,157,252	+		CCNA_03003	0.46	-0.6
3,157,252	+		CCNA_03003	0.46	-0.9
3,157,253	+		CCNA_03003	0.46	-0.7
3,157,260	-		CCNA_03003	0.46	-0.4
3,157,276	+		CCNA_03003	0.47	+0.4
3,157,283	+		CCNA_03003	0.48	+0.3
3,157,284	-		CCNA_03003	0.48	-2.0
3,157,291	-		CCNA_03003	0.48	+0.2
3,157,295	-		CCNA_03003	0.49	-1.2
3,157,314	+		CCNA_03003	0.50	+1.4
3,157,314	+		CCNA_03003	0.50	+0.4
3,157,319	+		CCNA_03003	0.50	-0.0
3,157,322	-		CCNA_03003	0.50	+0.4
3,157,322	-		CCNA_03003	0.50	+1.0
3,157,372	+		CCNA_03003	0.53	+1.1
3,157,380	-		CCNA_03003	0.54	-0.3
3,157,403	-		CCNA_03003	0.55	-1.3
3,157,403	-		CCNA_03003	0.55	-0.5
3,157,403	-		CCNA_03003	0.55	+1.4
3,157,475	+		CCNA_03003	0.59	-1.6
3,157,493	+		CCNA_03003	0.60	-0.4
3,157,493	+		CCNA_03003	0.60	-1.6
3,157,493	+		CCNA_03003	0.60	-1.3
3,157,493	+		CCNA_03003	0.60	-0.7
3,157,496	-		CCNA_03003	0.61	-0.6
3,157,501	-		CCNA_03003	0.61	-1.2
3,157,520	+		CCNA_03003	0.62	-1.9
3,157,530	-		CCNA_03003	0.63	-0.4
3,157,535	+		CCNA_03003	0.63	-0.9
3,157,552	-		CCNA_03003	0.64	-0.1
3,157,572	-		CCNA_03003	0.65	-0.5
3,157,586	+		CCNA_03003	0.66	+0.5
3,157,621	+		CCNA_03003	0.68	-0.2
3,157,621	+		CCNA_03003	0.68	-1.0
3,157,621	+		CCNA_03003	0.68	-2.2
3,157,621	+		CCNA_03003	0.68	+0.6
3,157,627	+		CCNA_03003	0.68	-2.0
3,157,629	-		CCNA_03003	0.69	-2.4
3,157,629	-		CCNA_03003	0.69	-0.2
3,157,629	-		CCNA_03003	0.69	+0.8
3,157,642	+		CCNA_03003	0.69	-1.0
3,157,644	-		CCNA_03003	0.69	-0.9
3,157,701	+		CCNA_03003	0.73	-0.8
3,157,704	-		CCNA_03003	0.73	-1.2
3,157,709	-		CCNA_03003	0.73	+1.8
3,157,709	-		CCNA_03003	0.73	+0.3
3,157,709	-		CCNA_03003	0.73	-0.2
3,157,717	+		CCNA_03003	0.74	-1.8
3,157,725	-		CCNA_03003	0.74	-0.3
3,157,725	-		CCNA_03003	0.74	-1.0
3,157,725	-				+0.4
3,157,725	-		CCNA_03003	0.74	+1.2
3,157,769	-		CCNA_03003	0.77	+3.2
3,157,769	-		CCNA_03003	0.77	-0.5
3,157,798	+		CCNA_03003	0.79	-0.8
3,157,807	+		CCNA_03003	0.79	-1.4
3,157,814	+		CCNA_03003	0.80	-0.7
3,157,814	+		CCNA_03003	0.80	-0.8
3,157,856	-		CCNA_03003	0.82	-0.6
3,157,878	-		CCNA_03003	0.83	-2.0
3,157,916	-		CCNA_03003	0.86	+0.8
3,157,921	+		CCNA_03003	0.86	-1.7
3,157,921	+		CCNA_03003	0.86	-0.9
3,157,921	+		CCNA_03003	0.86	-2.0
3,157,929	-		CCNA_03003	0.86	-1.5
3,157,929	-		CCNA_03003	0.86	+0.8
3,157,929	-		CCNA_03003	0.86	+0.6
3,157,929	-		CCNA_03003	0.86	-0.6
3,157,929	-		CCNA_03003	0.86	-0.3
3,157,959	+		CCNA_03003	0.88	-1.0
3,157,959	+		CCNA_03003	0.88	-0.8
3,157,967	-		CCNA_03003	0.89	+1.7
3,157,967	-		CCNA_03003	0.89	+0.1
3,157,967	-		CCNA_03003	0.89	+0.6
3,157,987	+		CCNA_03003	0.90	-0.0
3,158,026	+				-1.0
3,158,032	+				-2.1
3,158,039	+				-1.2
3,158,062	+				-0.1
3,158,067	+				+0.1
3,158,070	-				-0.2
3,158,070	-				-0.3
3,158,098	+				-1.5
3,158,129	-				-2.2
3,158,129	-				-0.7
3,158,232	+				-1.0
3,158,237	+				+0.2
3,158,251	+		CCNA_03004	0.11	-1.8
3,158,255	+		CCNA_03004	0.11	-1.3
3,158,263	-		CCNA_03004	0.12	-1.4
3,158,296	-		CCNA_03004	0.16	-1.4
3,158,439	+		CCNA_03004	0.32	-0.6
3,158,439	+		CCNA_03004	0.32	-1.2
3,158,505	-		CCNA_03004	0.39	-1.0
3,158,523	+		CCNA_03004	0.41	-0.2
3,158,523	+		CCNA_03004	0.41	-1.9
3,158,541	-		CCNA_03004	0.43	-1.9
3,158,547	+		CCNA_03004	0.44	-2.5
3,158,600	+		CCNA_03004	0.49	-1.7
3,158,687	-		CCNA_03004	0.59	-0.3
3,158,769	+		CCNA_03004	0.68	-1.3
3,158,769	+		CCNA_03004	0.68	-0.2
3,158,792	-		CCNA_03004	0.71	-0.4
3,158,792	-		CCNA_03004	0.71	-0.2
3,158,792	-		CCNA_03004	0.71	-2.8
3,158,803	+		CCNA_03004	0.72	+0.0
3,158,811	-		CCNA_03004	0.73	-1.2
3,158,928	+		CCNA_03004	0.86	+0.8
3,158,951	+		CCNA_03004	0.88	+0.0
3,158,977	+				-2.2
3,158,977	+				-0.4
3,158,984	-				-0.7
3,159,021	-				-0.4
3,159,026	+				+0.1
3,159,049	+				-0.6
3,159,049	+				-0.4
3,159,049	+				-0.5
3,159,049	+				+1.4
3,159,057	-				-1.6
3,159,057	-				-0.2
3,159,057	-				-1.1
3,159,057	-				+1.4
3,159,057	-				-0.5
3,159,064	+				+0.7
3,159,081	-				-0.4
3,159,127	-		CCNA_03005	0.13	-0.5
3,159,129	+		CCNA_03005	0.14	-1.2
3,159,129	+		CCNA_03005	0.14	-0.8
3,159,129	+		CCNA_03005	0.14	+1.4
3,159,129	+		CCNA_03005	0.14	-0.1
3,159,129	+		CCNA_03005	0.14	-0.8
3,159,129	+		CCNA_03005	0.14	+1.8
3,159,129	+		CCNA_03005	0.14	+1.6
3,159,129	+		CCNA_03005	0.14	-1.3
3,159,129	+		CCNA_03005	0.14	-1.0
3,159,129	+		CCNA_03005	0.14	-0.2
3,159,137	-		CCNA_03005	0.16	-0.1
3,159,137	-		CCNA_03005	0.16	-0.1
3,159,137	-		CCNA_03005	0.16	-0.6
3,159,137	-		CCNA_03005	0.16	+1.4
3,159,137	-		CCNA_03005	0.16	-0.4
3,159,137	-		CCNA_03005	0.16	-1.1
3,159,137	-		CCNA_03005	0.16	+0.1
3,159,137	-		CCNA_03005	0.16	-0.6
3,159,160	-		CCNA_03005	0.21	-0.2
3,159,160	-		CCNA_03005	0.21	-0.5
3,159,207	-		CCNA_03005	0.31	-0.2
3,159,207	-		CCNA_03005	0.31	+0.8
3,159,207	-		CCNA_03005	0.31	-1.7
3,159,207	-		CCNA_03005	0.31	+0.4
3,159,207	-		CCNA_03005	0.31	-1.3
3,159,207	-		CCNA_03005	0.31	-0.3
3,159,207	-		CCNA_03005	0.31	-1.7
3,159,216	+		CCNA_03005	0.33	-0.9
3,159,224	-		CCNA_03005	0.35	+0.7
3,159,224	-		CCNA_03005	0.35	-0.6
3,159,300	-		CCNA_03005	0.52	-0.7
3,159,343	+		CCNA_03005	0.62	+0.1
3,159,343	+		CCNA_03005	0.62	+0.9
3,159,343	+		CCNA_03005	0.62	+0.1
3,159,343	+		CCNA_03005	0.62	-1.3
3,159,348	+		CCNA_03005	0.63	+0.1
3,159,351	-		CCNA_03005	0.64	-0.6
3,159,351	-		CCNA_03005	0.64	+0.7
3,159,354	+		CCNA_03005	0.64	+1.4
3,159,375	+				+1.4
3,159,381	-		CCNA_03005	0.70	-0.8
3,159,406	+		CCNA_03005	0.76	+0.8
3,159,407	-		CCNA_03005	0.76	-1.7
3,159,407	-		CCNA_03005	0.76	-0.4
3,159,435	+		CCNA_03005	0.82	+0.6
3,159,464	-		CCNA_03005	0.89	-0.2
3,159,467	+		CCNA_03005	0.89	+0.8
3,159,475	-				+2.4
3,159,475	-				+0.3
3,159,475	-				-0.8
3,159,551	+				+1.8
3,159,554	-				+2.0
3,159,602	-				+1.1