Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01702

Experiment: PYE 0.5x 30C survival rep1 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep1 12 days
1,832,931	-				+1.0
1,832,934	+				+0.6
1,832,934	+				-1.2
1,832,942	-				+0.3
1,832,952	-				+0.9
1,832,989	+				-2.4
1,832,997	-				+0.6
1,833,045	+		CCNA_01701	0.11	-2.3
1,833,091	+		CCNA_01701	0.15	-1.1
1,833,116	+		CCNA_01701	0.18	-0.8
1,833,129	+		CCNA_01701	0.19	+1.3
1,833,130	+		CCNA_01701	0.19	-1.8
1,833,130	+		CCNA_01701	0.19	-1.1
1,833,137	-		CCNA_01701	0.20	-0.4
1,833,137	-		CCNA_01701	0.20	-0.6
1,833,138	-		CCNA_01701	0.20	+0.6
1,833,138	-		CCNA_01701	0.20	+0.0
1,833,171	-		CCNA_01701	0.23	-2.9
1,833,203	-		CCNA_01701	0.27	-0.4
1,833,210	+		CCNA_01701	0.27	+0.3
1,833,210	+		CCNA_01701	0.27	+2.6
1,833,241	-		CCNA_01701	0.30	-2.1
1,833,243	+		CCNA_01701	0.31	-0.8
1,833,254	+		CCNA_01701	0.32	-0.6
1,833,272	-		CCNA_01701	0.34	-0.4
1,833,319	+		CCNA_01701	0.38	-2.1
1,833,320	+		CCNA_01701	0.39	+1.0
1,833,320	+		CCNA_01701	0.39	-0.2
1,833,320	+		CCNA_01701	0.39	-0.4
1,833,339	+		CCNA_01701	0.40	-1.3
1,833,403	+		CCNA_01701	0.47	+1.6
1,833,423	+		CCNA_01701	0.49	+2.0
1,833,426	+		CCNA_01701	0.49	-0.8
1,833,434	-		CCNA_01701	0.50	+1.0
1,833,436	+		CCNA_01701	0.50	-0.7
1,833,581	+		CCNA_01701	0.65	-0.2
1,833,606	-		CCNA_01701	0.67	+2.6
1,833,636	+		CCNA_01701	0.71	-0.9
1,833,674	+				+1.0
1,833,674	+		CCNA_01701	0.74	+1.3
1,833,674	+		CCNA_01701	0.74	-0.7
1,833,674	+		CCNA_01701	0.74	-1.1
1,833,674	+		CCNA_01701	0.74	-2.2
1,833,680	+		CCNA_01701	0.75	-0.4
1,833,694	+		CCNA_01701	0.76	-2.1
1,833,718	-		CCNA_01701	0.79	+0.5
1,833,718	-		CCNA_01701	0.79	+0.8
1,833,719	+		CCNA_01701	0.79	-1.9
1,833,745	-		CCNA_01701	0.82	+1.0
1,833,745	-		CCNA_01701	0.82	+1.3
1,833,759	+		CCNA_01701	0.83	-2.4
1,833,772	-		CCNA_01701	0.84	+1.6
1,833,780	+		CCNA_01701	0.85	-0.1
1,833,821	-		CCNA_01701	0.89	+2.6
1,833,849	-				+1.0
1,833,895	+				-1.5
1,833,916	-				+1.6
1,833,947	-				+2.6
1,833,983	-				+2.6
1,833,993	+				-1.5
1,834,033	+				-3.7
1,834,046	-		CCNA_01702	0.11	+2.6
1,834,096	+		CCNA_01702	0.15	-3.0
1,834,096	+		CCNA_01702	0.15	-1.8
1,834,099	-		CCNA_01702	0.15	-0.8
1,834,172	+		CCNA_01702	0.22	-3.0
1,834,181	+		CCNA_01702	0.23	-3.2
1,834,208	+		CCNA_01702	0.25	-0.7
1,834,250	+		CCNA_01702	0.29	-0.7
1,834,263	+		CCNA_01702	0.30	-2.7
1,834,267	+		CCNA_01702	0.30	+0.0
1,834,301	+		CCNA_01702	0.33	-0.8
1,834,313	+		CCNA_01702	0.34	-0.6
1,834,313	+		CCNA_01702	0.34	-2.9
1,834,318	+		CCNA_01702	0.35	-0.4
1,834,321	-		CCNA_01702	0.35	-0.4
1,834,324	+		CCNA_01702	0.35	-1.5
1,834,326	-		CCNA_01702	0.35	+2.6
1,834,326	-		CCNA_01702	0.35	+2.6
1,834,326	-		CCNA_01702	0.35	-0.2
1,834,326	-		CCNA_01702	0.35	+0.3
1,834,327	-		CCNA_01702	0.35	-1.3
1,834,327	-		CCNA_01702	0.35	+1.6
1,834,327	-		CCNA_01702	0.35	-0.7
1,834,422	+		CCNA_01702	0.44	-0.7
1,834,423	-		CCNA_01702	0.44	-0.6
1,834,517	-		CCNA_01702	0.52	+0.0
1,834,569	+		CCNA_01702	0.57	-2.4
1,834,577	-		CCNA_01702	0.58	-1.3
1,834,577	-		CCNA_01702	0.58	+0.3
1,834,626	+		CCNA_01702	0.62	-2.6
1,834,679	+		CCNA_01702	0.67	-2.1
1,834,684	+		CCNA_01702	0.67	-3.0
1,834,739	+		CCNA_01702	0.72	-1.6
1,834,739	+		CCNA_01702	0.72	-4.3
1,834,752	-		CCNA_01702	0.73	+1.0
1,834,760	+		CCNA_01702	0.74	-2.7
1,834,788	-		CCNA_01702	0.76	-2.1
1,834,793	+		CCNA_01702	0.77	-1.0
1,834,827	+		CCNA_01702	0.80	-2.2
1,834,928	+		CCNA_01702	0.89	-2.4
1,834,928	+		CCNA_01702	0.89	-2.4
1,834,936	-		CCNA_01702	0.89	-1.3
1,834,936	-		CCNA_01702	0.89	+0.3
1,834,955	-				+0.3
1,834,960	-				+1.6
1,834,984	+				-0.7
1,834,986	+				+0.7
1,834,987	-				-0.7
1,834,994	-				-0.2
1,834,994	-				-1.1
1,835,048	-				+1.6
1,835,053	-				-1.7
1,835,055	+				-0.7
1,835,063	-				-2.0
1,835,118	-				-0.9
1,835,123	+				-1.1
1,835,124	+				-1.6
1,835,152	+				-2.8
1,835,160	-				-0.7
1,835,160	-				+0.6
1,835,160	-				-0.8
1,835,160	-				-0.6
1,835,197	-		CCNA_01703	0.13	-0.8
1,835,201	+		CCNA_01703	0.14	-0.7
1,835,277	+		CCNA_01703	0.21	-3.9
1,835,382	+		CCNA_01703	0.31	-2.0
1,835,400	-		CCNA_01703	0.33	+2.6
1,835,405	-		CCNA_01703	0.33	-0.4
1,835,405	-		CCNA_01703	0.33	+1.0
1,835,415	+		CCNA_01703	0.34	+0.7
1,835,415	+		CCNA_01703	0.34	-2.3
1,835,415	+		CCNA_01703	0.34	-2.3
1,835,415	+		CCNA_01703	0.34	-2.5
1,835,415	+		CCNA_01703	0.34	-2.7
1,835,423	-		CCNA_01703	0.35	+0.2
1,835,423	-		CCNA_01703	0.35	-2.5
1,835,436	-		CCNA_01703	0.36	-2.0
1,835,479	+		CCNA_01703	0.40	+0.5
1,835,479	+		CCNA_01703	0.40	-2.5
1,835,497	+		CCNA_01703	0.42	-2.0
1,835,503	-		CCNA_01703	0.42	-1.0
1,835,503	-		CCNA_01703	0.42	-1.0
1,835,600	-		CCNA_01703	0.52	+1.0
1,835,753	-		CCNA_01703	0.66	+0.6
1,835,772	+		CCNA_01703	0.68	-0.4
1,835,772	+		CCNA_01703	0.68	-1.8
1,835,772	+		CCNA_01703	0.68	-2.8
1,835,780	-		CCNA_01703	0.69	-2.1
1,835,780	-		CCNA_01703	0.69	-0.6
1,835,780	-		CCNA_01703	0.69	-2.3
1,835,802	+		CCNA_01703	0.71	-1.2
1,835,837	-		CCNA_01703	0.74	-1.1
1,835,839	+		CCNA_01703	0.74	-3.5
1,835,839	+		CCNA_01703	0.74	-2.8
1,835,847	-		CCNA_01703	0.75	-0.2
1,835,863	+		CCNA_01703	0.76	-2.3
1,835,876	-		CCNA_01703	0.78	+2.6
1,835,912	+		CCNA_01703	0.81	-2.3
1,835,936	-		CCNA_01703	0.83	+4.2
1,835,936	-		CCNA_01703	0.83	+0.3
1,835,950	+				+0.0
1,835,950	+		CCNA_01703	0.85	-1.9
1,835,950	+		CCNA_01703	0.85	-1.5
1,835,950	+		CCNA_01703	0.85	-2.2
1,835,950	+		CCNA_01703	0.85	-2.7
1,835,950	+		CCNA_01703	0.85	-3.8
1,835,958	-		CCNA_01703	0.85	+1.6
1,835,958	-		CCNA_01703	0.85	+1.6
1,835,958	-		CCNA_01703	0.85	+2.6
1,835,958	-		CCNA_01703	0.85	+1.0
1,835,964	-		CCNA_01703	0.86	+0.6
1,836,055	-				+2.6