Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16920

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16910 and BWI76_RS16915 are separated by 9 nucleotidesBWI76_RS16915 and BWI76_RS16920 are separated by 17 nucleotidesBWI76_RS16920 and BWI76_RS16925 are separated by 1 nucleotides BWI76_RS16910: BWI76_RS16910 - 2-keto-4-pentenoate hydratase, at 3,506,554 to 3,507,360 _RS16910 BWI76_RS16915: BWI76_RS16915 - alpha/beta hydrolase fold protein, at 3,507,370 to 3,508,236 _RS16915 BWI76_RS16920: BWI76_RS16920 - 3-(2,3-dihydroxyphenyl)propionate dioxygenase, at 3,508,254 to 3,509,198 _RS16920 BWI76_RS16925: BWI76_RS16925 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 3,509,200 to 3,510,867 _RS16925 Position (kb) 3508 3509 3510Strain fitness (log2 ratio) -2 -1 0 1at 3507.409 kb on + strandat 3507.410 kb on - strandat 3507.823 kb on - strand, within BWI76_RS16915at 3507.854 kb on + strand, within BWI76_RS16915at 3508.140 kb on + strand, within BWI76_RS16915at 3508.418 kb on + strand, within BWI76_RS16920at 3508.568 kb on + strand, within BWI76_RS16920at 3509.124 kb on + strandat 3509.955 kb on - strand, within BWI76_RS16925at 3510.070 kb on - strand, within BWI76_RS16925at 3510.179 kb on - strand, within BWI76_RS16925at 3510.192 kb on + strand, within BWI76_RS16925

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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3,507,409 + -0.9
3,507,410 - -0.9
3,507,823 - BWI76_RS16915 0.52 -0.2
3,507,854 + BWI76_RS16915 0.56 +0.1
3,508,140 + BWI76_RS16915 0.89 -0.0
3,508,418 + BWI76_RS16920 0.17 -1.2
3,508,568 + BWI76_RS16920 0.33 -2.3
3,509,124 + -0.2
3,509,955 - BWI76_RS16925 0.45 +0.7
3,510,070 - BWI76_RS16925 0.52 -0.8
3,510,179 - BWI76_RS16925 0.59 +0.5
3,510,192 + BWI76_RS16925 0.59 +0.6

Or see this region's nucleotide sequence