Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13250

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13240 and BWI76_RS13245 are separated by 318 nucleotidesBWI76_RS13245 and BWI76_RS13250 are separated by 225 nucleotidesBWI76_RS13250 and BWI76_RS13255 are separated by 169 nucleotidesBWI76_RS13255 and BWI76_RS13260 are separated by 22 nucleotides BWI76_RS13240: BWI76_RS13240 - hypothetical protein, at 2,762,639 to 2,762,836 _RS13240 BWI76_RS13245: BWI76_RS13245 - DNA-damage-inducible protein I, at 2,763,155 to 2,763,397 _RS13245 BWI76_RS13250: BWI76_RS13250 - cytochrome b561, at 2,763,623 to 2,764,150 _RS13250 BWI76_RS13255: BWI76_RS13255 - hypothetical protein, at 2,764,320 to 2,764,595 _RS13255 BWI76_RS13260: BWI76_RS13260 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 2,764,618 to 2,765,736 _RS13260 Position (kb) 2763 2764 2765Strain fitness (log2 ratio) -1 0 1at 2762.757 kb on - strand, within BWI76_RS13240at 2763.340 kb on + strand, within BWI76_RS13245at 2763.350 kb on + strand, within BWI76_RS13245at 2763.465 kb on - strandat 2763.471 kb on - strandat 2763.472 kb on - strandat 2763.518 kb on - strandat 2763.518 kb on - strandat 2763.838 kb on + strand, within BWI76_RS13250at 2764.748 kb on + strand, within BWI76_RS13260at 2764.756 kb on - strand, within BWI76_RS13260at 2764.792 kb on + strand, within BWI76_RS13260

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,762,757 - BWI76_RS13240 0.60 -0.1
2,763,340 + BWI76_RS13245 0.76 -0.2
2,763,350 + BWI76_RS13245 0.80 -0.5
2,763,465 - +0.1
2,763,471 - -0.2
2,763,472 - +0.0
2,763,518 - +0.5
2,763,518 - +0.4
2,763,838 + BWI76_RS13250 0.41 -1.1
2,764,748 + BWI76_RS13260 0.12 -0.0
2,764,756 - BWI76_RS13260 0.12 +1.1
2,764,792 + BWI76_RS13260 0.16 -0.5

Or see this region's nucleotide sequence