Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07780

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07775 and BWI76_RS07780 are separated by 55 nucleotidesBWI76_RS07780 and BWI76_RS07785 overlap by 4 nucleotidesBWI76_RS07785 and BWI76_RS07790 overlap by 20 nucleotidesBWI76_RS07790 and BWI76_RS07795 are separated by 180 nucleotides BWI76_RS07775: BWI76_RS07775 - carbon starvation protein A, at 1,648,525 to 1,650,630 _RS07775 BWI76_RS07780: BWI76_RS07780 - hypothetical protein, at 1,650,686 to 1,650,883 _RS07780 BWI76_RS07785: BWI76_RS07785 - transcriptional regulator, at 1,650,880 to 1,651,284 _RS07785 BWI76_RS07790: BWI76_RS07790 - plasmid stabilization protein, at 1,651,265 to 1,651,566 _RS07790 BWI76_RS07795: BWI76_RS07795 - oxidoreductase, at 1,651,747 to 1,652,835 _RS07795 Position (kb) 1650 1651Strain fitness (log2 ratio) -2 -1 0 1at 1649.974 kb on - strand, within BWI76_RS07775at 1650.134 kb on + strand, within BWI76_RS07775at 1650.134 kb on + strand, within BWI76_RS07775at 1650.242 kb on - strand, within BWI76_RS07775at 1650.594 kb on - strandat 1650.633 kb on - strandat 1650.657 kb on - strandat 1650.773 kb on - strand, within BWI76_RS07780at 1650.886 kb on - strandat 1650.966 kb on + strand, within BWI76_RS07785at 1651.005 kb on + strand, within BWI76_RS07785at 1651.288 kb on - strandat 1651.430 kb on - strand, within BWI76_RS07790at 1651.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,649,974 - BWI76_RS07775 0.69 -0.9
1,650,134 + BWI76_RS07775 0.76 +0.3
1,650,134 + BWI76_RS07775 0.76 +0.9
1,650,242 - BWI76_RS07775 0.82 +0.5
1,650,594 - +0.1
1,650,633 - +0.9
1,650,657 - -0.5
1,650,773 - BWI76_RS07780 0.44 -1.0
1,650,886 - -0.3
1,650,966 + BWI76_RS07785 0.21 +0.7
1,651,005 + BWI76_RS07785 0.31 +0.7
1,651,288 - -2.4
1,651,430 - BWI76_RS07790 0.55 +0.3
1,651,827 + -0.3

Or see this region's nucleotide sequence