Experiment: 9 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2782 and DvMF_2783 are separated by 443 nucleotides DvMF_2783 and DvMF_2784 are separated by 178 nucleotides
DvMF_2782: DvMF_2782 - ABC transporter related (RefSeq), at 3,519,799 to 3,520,653
_2782
DvMF_2783: DvMF_2783 - acetate/CoA ligase (RefSeq), at 3,521,097 to 3,523,052
_2783
DvMF_2784: DvMF_2784 - two component transcriptional regulator, LytTR family (RefSeq), at 3,523,231 to 3,524,307
_2784
Position (kb)
3521
3522
3523
3524 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3520.497 kb on - strand, within DvMF_2782 at 3520.595 kb on + strand at 3520.725 kb on - strand at 3520.755 kb on + strand at 3521.097 kb on - strand at 3521.414 kb on - strand, within DvMF_2783 at 3521.476 kb on + strand, within DvMF_2783 at 3521.530 kb on + strand, within DvMF_2783 at 3521.813 kb on + strand, within DvMF_2783 at 3521.953 kb on + strand, within DvMF_2783 at 3521.961 kb on - strand, within DvMF_2783 at 3521.991 kb on - strand, within DvMF_2783 at 3522.000 kb on + strand, within DvMF_2783 at 3522.157 kb on + strand, within DvMF_2783 at 3522.518 kb on - strand, within DvMF_2783 at 3522.615 kb on + strand, within DvMF_2783 at 3522.746 kb on - strand, within DvMF_2783 at 3522.970 kb on + strand at 3522.973 kb on - strand at 3523.056 kb on - strand at 3523.170 kb on + strand at 3523.537 kb on + strand, within DvMF_2784 at 3523.545 kb on - strand, within DvMF_2784 at 3523.594 kb on - strand, within DvMF_2784 at 3523.611 kb on - strand, within DvMF_2784 at 3523.657 kb on + strand, within DvMF_2784 at 3523.673 kb on - strand, within DvMF_2784 at 3523.877 kb on + strand, within DvMF_2784 at 3523.914 kb on + strand, within DvMF_2784 at 3523.980 kb on + strand, within DvMF_2784 at 3524.019 kb on + strand, within DvMF_2784
Per-strain Table
Position Strand Gene LocusTag Fraction 9 day starvation, 30C remove 3,520,497 - DvMF_2782 0.82 -0.0 3,520,595 + +0.2 3,520,725 - +0.6 3,520,755 + +0.1 3,521,097 - +0.7 3,521,414 - DvMF_2783 0.16 -1.5 3,521,476 + DvMF_2783 0.19 -0.0 3,521,530 + DvMF_2783 0.22 -3.5 3,521,813 + DvMF_2783 0.37 -1.6 3,521,953 + DvMF_2783 0.44 -2.0 3,521,961 - DvMF_2783 0.44 -0.9 3,521,991 - DvMF_2783 0.46 -2.0 3,522,000 + DvMF_2783 0.46 -1.0 3,522,157 + DvMF_2783 0.54 -1.5 3,522,518 - DvMF_2783 0.73 -2.2 3,522,615 + DvMF_2783 0.78 -1.6 3,522,746 - DvMF_2783 0.84 -1.3 3,522,970 + -1.3 3,522,973 - -1.5 3,523,056 - -0.9 3,523,170 + -2.0 3,523,537 + DvMF_2784 0.28 -2.2 3,523,545 - DvMF_2784 0.29 -2.1 3,523,594 - DvMF_2784 0.34 -2.2 3,523,611 - DvMF_2784 0.35 -1.1 3,523,657 + DvMF_2784 0.40 -1.1 3,523,673 - DvMF_2784 0.41 -1.6 3,523,877 + DvMF_2784 0.60 -0.6 3,523,914 + DvMF_2784 0.63 -1.9 3,523,980 + DvMF_2784 0.70 +0.4 3,524,019 + DvMF_2784 0.73 -2.9
Or see this region's nucleotide sequence