Experiment: 9 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2709 and DvMF_2710 are separated by 447 nucleotides DvMF_2710 and DvMF_2711 are separated by 215 nucleotides DvMF_2711 and DvMF_2712 are separated by 9 nucleotides
DvMF_2709: DvMF_2709 - nitroreductase (RefSeq), at 3,428,898 to 3,429,662
_2709
DvMF_2710: DvMF_2710 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,430,110 to 3,431,855
_2710
DvMF_2711: DvMF_2711 - cytochrome c family protein (RefSeq), at 3,432,071 to 3,432,541
_2711
DvMF_2712: DvMF_2712 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,432,551 to 3,434,572
_2712
Position (kb)
3430
3431
3432 Strain fitness (log2 ratio)
-1
0
1 at 3429.118 kb on - strand, within DvMF_2709 at 3429.582 kb on - strand, within DvMF_2709 at 3429.646 kb on + strand at 3429.736 kb on - strand at 3430.173 kb on + strand at 3430.476 kb on - strand, within DvMF_2710 at 3430.518 kb on + strand, within DvMF_2710 at 3430.665 kb on + strand, within DvMF_2710 at 3430.685 kb on + strand, within DvMF_2710 at 3430.729 kb on + strand, within DvMF_2710 at 3430.829 kb on + strand, within DvMF_2710 at 3430.829 kb on + strand, within DvMF_2710 at 3430.935 kb on + strand, within DvMF_2710 at 3431.849 kb on + strand at 3431.857 kb on - strand at 3432.116 kb on - strand at 3432.169 kb on - strand, within DvMF_2711 at 3432.304 kb on - strand, within DvMF_2711 at 3432.339 kb on - strand, within DvMF_2711 at 3432.608 kb on + strand at 3432.790 kb on + strand, within DvMF_2712
Per-strain Table
Position Strand Gene LocusTag Fraction 9 day starvation, 30C remove 3,429,118 - DvMF_2709 0.29 +1.0 3,429,582 - DvMF_2709 0.89 +0.6 3,429,646 + +1.2 3,429,736 - +0.6 3,430,173 + +0.8 3,430,476 - DvMF_2710 0.21 +0.4 3,430,518 + DvMF_2710 0.23 +0.7 3,430,665 + DvMF_2710 0.32 +0.8 3,430,685 + DvMF_2710 0.33 -0.3 3,430,729 + DvMF_2710 0.35 +1.4 3,430,829 + DvMF_2710 0.41 +0.5 3,430,829 + DvMF_2710 0.41 +0.6 3,430,935 + DvMF_2710 0.47 -0.2 3,431,849 + +0.3 3,431,857 - +0.6 3,432,116 - +0.8 3,432,169 - DvMF_2711 0.21 +0.9 3,432,304 - DvMF_2711 0.49 +1.6 3,432,339 - DvMF_2711 0.57 +0.3 3,432,608 + -0.2 3,432,790 + DvMF_2712 0.12 +0.6
Or see this region's nucleotide sequence