Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2524

Experiment: 9 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2522 and DvMF_2523 are separated by 4 nucleotidesDvMF_2523 and DvMF_2524 are separated by 0 nucleotidesDvMF_2524 and DvMF_2525 are separated by 18 nucleotides DvMF_2522: DvMF_2522 - Peptidase M23 (RefSeq), at 3,179,931 to 3,181,748 _2522 DvMF_2523: DvMF_2523 - FlgN family protein (RefSeq), at 3,181,753 to 3,182,217 _2523 DvMF_2524: DvMF_2524 - flagellar hook-associated protein FlgK (RefSeq), at 3,182,218 to 3,184,326 _2524 DvMF_2525: DvMF_2525 - flagellar hook-associated protein 3 (RefSeq), at 3,184,345 to 3,185,868 _2525 Position (kb) 3182 3183 3184 3185Strain fitness (log2 ratio) -3 -2 -1 0 1at 3181.319 kb on + strand, within DvMF_2522at 3181.464 kb on - strand, within DvMF_2522at 3181.507 kb on + strand, within DvMF_2522at 3181.555 kb on + strand, within DvMF_2522at 3181.645 kb on + strandat 3181.752 kb on + strandat 3181.803 kb on - strand, within DvMF_2523at 3181.919 kb on + strand, within DvMF_2523at 3182.027 kb on + strand, within DvMF_2523at 3182.040 kb on - strand, within DvMF_2523at 3182.373 kb on - strandat 3182.393 kb on - strandat 3182.472 kb on + strand, within DvMF_2524at 3182.480 kb on + strand, within DvMF_2524at 3182.672 kb on + strand, within DvMF_2524at 3183.072 kb on - strand, within DvMF_2524at 3183.108 kb on - strand, within DvMF_2524at 3183.244 kb on - strand, within DvMF_2524at 3183.474 kb on - strand, within DvMF_2524at 3183.561 kb on - strand, within DvMF_2524at 3183.758 kb on - strand, within DvMF_2524at 3183.758 kb on - strand, within DvMF_2524at 3183.797 kb on + strand, within DvMF_2524at 3184.063 kb on - strand, within DvMF_2524at 3184.596 kb on + strand, within DvMF_2525at 3184.722 kb on + strand, within DvMF_2525at 3184.822 kb on - strand, within DvMF_2525at 3185.111 kb on - strand, within DvMF_2525

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 30C
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3,181,319 + DvMF_2522 0.76 +0.5
3,181,464 - DvMF_2522 0.84 +0.2
3,181,507 + DvMF_2522 0.87 -0.2
3,181,555 + DvMF_2522 0.89 +0.8
3,181,645 + +0.2
3,181,752 + -0.1
3,181,803 - DvMF_2523 0.11 -0.8
3,181,919 + DvMF_2523 0.36 -3.0
3,182,027 + DvMF_2523 0.59 -0.3
3,182,040 - DvMF_2523 0.62 -0.9
3,182,373 - -1.7
3,182,393 - +1.4
3,182,472 + DvMF_2524 0.12 -0.9
3,182,480 + DvMF_2524 0.12 -0.3
3,182,672 + DvMF_2524 0.22 -1.3
3,183,072 - DvMF_2524 0.40 +0.8
3,183,108 - DvMF_2524 0.42 -0.5
3,183,244 - DvMF_2524 0.49 -1.6
3,183,474 - DvMF_2524 0.60 +0.2
3,183,561 - DvMF_2524 0.64 -0.7
3,183,758 - DvMF_2524 0.73 +0.0
3,183,758 - DvMF_2524 0.73 -1.3
3,183,797 + DvMF_2524 0.75 -1.2
3,184,063 - DvMF_2524 0.87 -1.0
3,184,596 + DvMF_2525 0.16 -1.7
3,184,722 + DvMF_2525 0.25 -0.7
3,184,822 - DvMF_2525 0.31 -1.6
3,185,111 - DvMF_2525 0.50 -0.6

Or see this region's nucleotide sequence