Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2483

Experiment: 9 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2482 and DvMF_2483 are separated by 371 nucleotidesDvMF_2483 and DvMF_2484 are separated by 272 nucleotides DvMF_2482: DvMF_2482 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,128,363 to 3,130,384 _2482 DvMF_2483: DvMF_2483 - multi-sensor hybrid histidine kinase (RefSeq), at 3,130,756 to 3,133,971 _2483 DvMF_2484: DvMF_2484 - Phosphoribosylformylglycinamidine synthase (RefSeq), at 3,134,244 to 3,137,258 _2484 Position (kb) 3130 3131 3132 3133 3134Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3129.965 kb on - strand, within DvMF_2482at 3130.028 kb on - strand, within DvMF_2482at 3130.028 kb on - strand, within DvMF_2482at 3130.188 kb on + strandat 3130.226 kb on - strandat 3130.422 kb on + strandat 3130.525 kb on + strandat 3130.758 kb on + strandat 3130.766 kb on - strandat 3130.770 kb on + strandat 3130.918 kb on + strandat 3131.804 kb on + strand, within DvMF_2483at 3131.867 kb on + strand, within DvMF_2483at 3132.022 kb on + strand, within DvMF_2483at 3132.030 kb on - strand, within DvMF_2483at 3132.120 kb on + strand, within DvMF_2483at 3132.305 kb on - strand, within DvMF_2483at 3132.328 kb on - strand, within DvMF_2483at 3132.340 kb on + strand, within DvMF_2483at 3132.340 kb on + strand, within DvMF_2483at 3132.348 kb on - strand, within DvMF_2483at 3132.396 kb on + strand, within DvMF_2483at 3132.404 kb on - strand, within DvMF_2483at 3132.405 kb on - strand, within DvMF_2483at 3132.454 kb on + strand, within DvMF_2483at 3132.498 kb on - strand, within DvMF_2483at 3132.516 kb on - strand, within DvMF_2483at 3132.548 kb on + strand, within DvMF_2483at 3132.556 kb on - strand, within DvMF_2483at 3132.646 kb on - strand, within DvMF_2483at 3132.646 kb on - strand, within DvMF_2483at 3132.819 kb on - strand, within DvMF_2483at 3132.849 kb on + strand, within DvMF_2483at 3132.857 kb on - strand, within DvMF_2483at 3132.857 kb on - strand, within DvMF_2483at 3132.857 kb on - strand, within DvMF_2483at 3133.095 kb on + strand, within DvMF_2483at 3133.103 kb on - strand, within DvMF_2483at 3133.356 kb on + strand, within DvMF_2483at 3133.366 kb on + strand, within DvMF_2483at 3133.371 kb on + strand, within DvMF_2483at 3133.511 kb on - strand, within DvMF_2483at 3133.605 kb on - strand, within DvMF_2483at 3133.634 kb on - strand, within DvMF_2483at 3133.928 kb on + strandat 3133.928 kb on + strandat 3133.992 kb on + strandat 3134.102 kb on - strandat 3134.181 kb on + strandat 3134.313 kb on - strandat 3134.313 kb on - strandat 3134.594 kb on - strand, within DvMF_2484at 3134.809 kb on - strand, within DvMF_2484at 3134.894 kb on + strand, within DvMF_2484at 3134.958 kb on - strand, within DvMF_2484

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 30C
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3,129,965 - DvMF_2482 0.79 +0.6
3,130,028 - DvMF_2482 0.82 +1.1
3,130,028 - DvMF_2482 0.82 +0.4
3,130,188 + +0.7
3,130,226 - +0.6
3,130,422 + +0.8
3,130,525 + +0.6
3,130,758 + +0.3
3,130,766 - +0.2
3,130,770 + +0.2
3,130,918 + -0.3
3,131,804 + DvMF_2483 0.33 -0.6
3,131,867 + DvMF_2483 0.35 +0.4
3,132,022 + DvMF_2483 0.39 +0.2
3,132,030 - DvMF_2483 0.40 +0.7
3,132,120 + DvMF_2483 0.42 -0.2
3,132,305 - DvMF_2483 0.48 +0.3
3,132,328 - DvMF_2483 0.49 +0.2
3,132,340 + DvMF_2483 0.49 +0.5
3,132,340 + DvMF_2483 0.49 +0.1
3,132,348 - DvMF_2483 0.50 -0.1
3,132,396 + DvMF_2483 0.51 +0.9
3,132,404 - DvMF_2483 0.51 +0.1
3,132,405 - DvMF_2483 0.51 +0.2
3,132,454 + DvMF_2483 0.53 +0.1
3,132,498 - DvMF_2483 0.54 -0.0
3,132,516 - DvMF_2483 0.55 +0.1
3,132,548 + DvMF_2483 0.56 +0.1
3,132,556 - DvMF_2483 0.56 +0.0
3,132,646 - DvMF_2483 0.59 +0.3
3,132,646 - DvMF_2483 0.59 +0.0
3,132,819 - DvMF_2483 0.64 +0.4
3,132,849 + DvMF_2483 0.65 +0.3
3,132,857 - DvMF_2483 0.65 +0.2
3,132,857 - DvMF_2483 0.65 -0.9
3,132,857 - DvMF_2483 0.65 +0.2
3,133,095 + DvMF_2483 0.73 +0.2
3,133,103 - DvMF_2483 0.73 +0.2
3,133,356 + DvMF_2483 0.81 -0.9
3,133,366 + DvMF_2483 0.81 +2.8
3,133,371 + DvMF_2483 0.81 +0.5
3,133,511 - DvMF_2483 0.86 +0.2
3,133,605 - DvMF_2483 0.89 -0.3
3,133,634 - DvMF_2483 0.89 +0.8
3,133,928 + +0.1
3,133,928 + -0.1
3,133,992 + +0.2
3,134,102 - +0.4
3,134,181 + +1.8
3,134,313 - -4.4
3,134,313 - -2.8
3,134,594 - DvMF_2484 0.12 -4.1
3,134,809 - DvMF_2484 0.19 -3.5
3,134,894 + DvMF_2484 0.22 -4.9
3,134,958 - DvMF_2484 0.24 -1.7

Or see this region's nucleotide sequence