Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1853

Experiment: 9 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1852 and DvMF_1853 are separated by 191 nucleotidesDvMF_1853 and DvMF_1854 are separated by 108 nucleotides DvMF_1852: DvMF_1852 - glycosyl transferase family 2 (RefSeq), at 2,264,492 to 2,266,969 _1852 DvMF_1853: DvMF_1853 - glycosyl transferase group 1 (RefSeq), at 2,267,161 to 2,268,318 _1853 DvMF_1854: DvMF_1854 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,268,427 to 2,269,359 _1854 Position (kb) 2267 2268 2269Strain fitness (log2 ratio) -1 0 1at 2266.189 kb on + strand, within DvMF_1852at 2266.311 kb on + strand, within DvMF_1852at 2266.316 kb on + strand, within DvMF_1852at 2266.424 kb on - strand, within DvMF_1852at 2266.574 kb on + strand, within DvMF_1852at 2266.598 kb on + strand, within DvMF_1852at 2266.627 kb on + strand, within DvMF_1852at 2266.689 kb on - strand, within DvMF_1852at 2266.854 kb on - strandat 2266.928 kb on + strandat 2266.972 kb on + strandat 2267.082 kb on - strandat 2267.128 kb on - strandat 2267.317 kb on + strand, within DvMF_1853at 2267.446 kb on - strand, within DvMF_1853at 2267.679 kb on - strand, within DvMF_1853at 2267.842 kb on - strand, within DvMF_1853at 2267.916 kb on + strand, within DvMF_1853at 2267.937 kb on - strand, within DvMF_1853at 2268.015 kb on - strand, within DvMF_1853at 2268.052 kb on - strand, within DvMF_1853at 2268.057 kb on - strand, within DvMF_1853at 2268.667 kb on - strand, within DvMF_1854at 2268.837 kb on + strand, within DvMF_1854at 2268.937 kb on + strand, within DvMF_1854at 2269.043 kb on - strand, within DvMF_1854at 2269.068 kb on + strand, within DvMF_1854at 2269.143 kb on - strand, within DvMF_1854at 2269.143 kb on - strand, within DvMF_1854

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 30C
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2,266,189 + DvMF_1852 0.68 +0.3
2,266,311 + DvMF_1852 0.73 +0.7
2,266,316 + DvMF_1852 0.74 +0.4
2,266,424 - DvMF_1852 0.78 +0.4
2,266,574 + DvMF_1852 0.84 +0.8
2,266,598 + DvMF_1852 0.85 +0.4
2,266,627 + DvMF_1852 0.86 +1.0
2,266,689 - DvMF_1852 0.89 +0.8
2,266,854 - +1.3
2,266,928 + -0.3
2,266,972 + +0.9
2,267,082 - +0.2
2,267,128 - +0.4
2,267,317 + DvMF_1853 0.13 +0.3
2,267,446 - DvMF_1853 0.25 +0.7
2,267,679 - DvMF_1853 0.45 +0.5
2,267,842 - DvMF_1853 0.59 +0.5
2,267,916 + DvMF_1853 0.65 -0.3
2,267,937 - DvMF_1853 0.67 +0.4
2,268,015 - DvMF_1853 0.74 +0.3
2,268,052 - DvMF_1853 0.77 +0.8
2,268,057 - DvMF_1853 0.77 +0.0
2,268,667 - DvMF_1854 0.26 +0.6
2,268,837 + DvMF_1854 0.44 +0.4
2,268,937 + DvMF_1854 0.55 +0.6
2,269,043 - DvMF_1854 0.66 +0.6
2,269,068 + DvMF_1854 0.69 +0.4
2,269,143 - DvMF_1854 0.77 +0.8
2,269,143 - DvMF_1854 0.77 +0.3

Or see this region's nucleotide sequence