Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1593

Experiment: 9 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1593 and DvMF_1594 overlap by 25 nucleotidesDvMF_1594 and DvMF_1595 overlap by 4 nucleotides DvMF_1593: DvMF_1593 - NADH-ubiquinone/plastoquinone oxidoreductase chain 3 (RefSeq), at 1,966,029 to 1,966,409 _1593 DvMF_1594: DvMF_1594 - NADH-quinone oxidoreductase, B subunit (RefSeq), at 1,966,385 to 1,966,948 _1594 DvMF_1595: DvMF_1595 - NADH dehydrogenase (ubiquinone) 30 kDa subunit (RefSeq), at 1,966,945 to 1,967,550 _1595 Position (kb) 1966 1967Strain fitness (log2 ratio) -1 0 1at 1965.252 kb on + strandat 1965.404 kb on - strandat 1965.526 kb on - strandat 1965.552 kb on - strandat 1965.627 kb on - strandat 1965.634 kb on + strandat 1965.705 kb on + strandat 1965.713 kb on - strandat 1966.117 kb on - strand, within DvMF_1593at 1966.178 kb on - strand, within DvMF_1593at 1966.286 kb on + strand, within DvMF_1593at 1966.301 kb on - strand, within DvMF_1593at 1966.329 kb on + strand, within DvMF_1593at 1966.355 kb on + strand, within DvMF_1593at 1966.355 kb on + strand, within DvMF_1593at 1966.780 kb on + strand, within DvMF_1594at 1966.854 kb on + strand, within DvMF_1594at 1967.048 kb on - strand, within DvMF_1595at 1967.050 kb on + strand, within DvMF_1595at 1967.050 kb on + strand, within DvMF_1595at 1967.230 kb on + strand, within DvMF_1595at 1967.319 kb on + strand, within DvMF_1595at 1967.327 kb on - strand, within DvMF_1595

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 30C
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1,965,252 + +0.8
1,965,404 - +0.4
1,965,526 - -0.3
1,965,552 - +1.1
1,965,627 - +0.3
1,965,634 + +0.5
1,965,705 + +0.3
1,965,713 - +0.3
1,966,117 - DvMF_1593 0.23 +0.3
1,966,178 - DvMF_1593 0.39 -0.4
1,966,286 + DvMF_1593 0.67 -0.2
1,966,301 - DvMF_1593 0.71 -0.9
1,966,329 + DvMF_1593 0.79 +0.3
1,966,355 + DvMF_1593 0.86 -0.6
1,966,355 + DvMF_1593 0.86 -0.4
1,966,780 + DvMF_1594 0.70 -0.2
1,966,854 + DvMF_1594 0.83 -1.0
1,967,048 - DvMF_1595 0.17 +0.2
1,967,050 + DvMF_1595 0.17 +1.4
1,967,050 + DvMF_1595 0.17 -0.1
1,967,230 + DvMF_1595 0.47 -0.6
1,967,319 + DvMF_1595 0.62 +0.9
1,967,327 - DvMF_1595 0.63 -0.3

Or see this region's nucleotide sequence