Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1408

Experiment: 9 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1407 and DvMF_1408 are separated by 272 nucleotidesDvMF_1408 and DvMF_1409 are separated by 253 nucleotides DvMF_1407: DvMF_1407 - metal dependent phosphohydrolase (RefSeq), at 1,719,440 to 1,721,515 _1407 DvMF_1408: DvMF_1408 - chorismate synthase (RefSeq), at 1,721,788 to 1,722,849 _1408 DvMF_1409: DvMF_1409 - UspA domain protein (RefSeq), at 1,723,103 to 1,723,525 _1409 Position (kb) 1721 1722 1723Strain fitness (log2 ratio) -1 0 1at 1720.870 kb on + strand, within DvMF_1407at 1721.174 kb on - strand, within DvMF_1407at 1721.736 kb on - strandat 1723.031 kb on + strandat 1723.053 kb on + strandat 1723.053 kb on + strandat 1723.130 kb on - strandat 1723.389 kb on - strand, within DvMF_1409at 1723.426 kb on + strand, within DvMF_1409at 1723.846 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 30C
remove
1,720,870 + DvMF_1407 0.69 +0.6
1,721,174 - DvMF_1407 0.84 +0.4
1,721,736 - +0.7
1,723,031 + +0.4
1,723,053 + -0.8
1,723,053 + +0.7
1,723,130 - -0.3
1,723,389 - DvMF_1409 0.68 +0.6
1,723,426 + DvMF_1409 0.76 +0.5
1,723,846 + +1.1

Or see this region's nucleotide sequence