Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1205

Experiment: 9 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1204 and DvMF_1205 are separated by 178 nucleotidesDvMF_1205 and DvMF_1206 are separated by 449 nucleotides DvMF_1204: DvMF_1204 - FMN-dependent alpha-hydroxy acid dehydrogenase (RefSeq), at 1,482,977 to 1,483,996 _1204 DvMF_1205: DvMF_1205 - GntR domain protein (RefSeq), at 1,484,175 to 1,484,891 _1205 DvMF_1206: DvMF_1206 - hypothetical protein (RefSeq), at 1,485,341 to 1,485,937 _1206 Position (kb) 1484 1485Strain fitness (log2 ratio) -3 -2 -1 0 1at 1483.316 kb on + strand, within DvMF_1204at 1483.383 kb on + strand, within DvMF_1204at 1483.391 kb on - strand, within DvMF_1204at 1483.473 kb on + strand, within DvMF_1204at 1483.758 kb on + strand, within DvMF_1204at 1483.763 kb on + strand, within DvMF_1204at 1483.766 kb on - strand, within DvMF_1204at 1483.812 kb on - strand, within DvMF_1204at 1483.945 kb on + strandat 1484.387 kb on - strand, within DvMF_1205at 1484.490 kb on + strand, within DvMF_1205at 1484.498 kb on - strand, within DvMF_1205at 1484.956 kb on + strandat 1485.050 kb on + strandat 1485.646 kb on + strand, within DvMF_1206at 1485.659 kb on - strand, within DvMF_1206

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 30C
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1,483,316 + DvMF_1204 0.33 -2.7
1,483,383 + DvMF_1204 0.40 -1.1
1,483,391 - DvMF_1204 0.41 -2.8
1,483,473 + DvMF_1204 0.49 +0.5
1,483,758 + DvMF_1204 0.77 -1.7
1,483,763 + DvMF_1204 0.77 -1.8
1,483,766 - DvMF_1204 0.77 -1.9
1,483,812 - DvMF_1204 0.82 -1.6
1,483,945 + -1.1
1,484,387 - DvMF_1205 0.30 +1.3
1,484,490 + DvMF_1205 0.44 +0.5
1,484,498 - DvMF_1205 0.45 +1.1
1,484,956 + +0.8
1,485,050 + +0.7
1,485,646 + DvMF_1206 0.51 +0.4
1,485,659 - DvMF_1206 0.53 +0.3

Or see this region's nucleotide sequence