Experiment: 9 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1062 and DvMF_1063 are separated by 90 nucleotides DvMF_1063 and DvMF_1064 are separated by 1 nucleotides DvMF_1064 and DvMF_1065 are separated by 164 nucleotides
DvMF_1062: DvMF_1062 - Tail Collar domain protein (RefSeq), at 1,302,815 to 1,304,407
_1062
DvMF_1063: DvMF_1063 - hypothetical protein (RefSeq), at 1,304,498 to 1,305,007
_1063
DvMF_1064: DvMF_1064 - hypothetical protein (RefSeq), at 1,305,009 to 1,305,587
_1064
DvMF_1065: DvMF_1065 - hypothetical protein (RefSeq), at 1,305,752 to 1,307,830
_1065
Position (kb)
1304
1305
1306 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1303.630 kb on + strand, within DvMF_1062 at 1303.759 kb on - strand, within DvMF_1062 at 1303.818 kb on + strand, within DvMF_1062 at 1303.818 kb on + strand, within DvMF_1062 at 1303.861 kb on - strand, within DvMF_1062 at 1303.861 kb on - strand, within DvMF_1062 at 1304.118 kb on + strand, within DvMF_1062 at 1304.126 kb on - strand, within DvMF_1062 at 1304.148 kb on + strand, within DvMF_1062 at 1304.267 kb on + strand at 1304.275 kb on - strand at 1304.370 kb on + strand at 1304.480 kb on + strand at 1304.493 kb on - strand at 1304.522 kb on + strand at 1304.558 kb on + strand, within DvMF_1063 at 1304.583 kb on - strand, within DvMF_1063 at 1304.618 kb on - strand, within DvMF_1063 at 1304.840 kb on - strand, within DvMF_1063 at 1304.950 kb on + strand, within DvMF_1063 at 1305.084 kb on - strand, within DvMF_1064 at 1305.350 kb on - strand, within DvMF_1064 at 1305.434 kb on + strand, within DvMF_1064 at 1305.485 kb on - strand, within DvMF_1064 at 1305.717 kb on - strand at 1305.838 kb on + strand at 1305.893 kb on + strand at 1305.918 kb on + strand at 1305.931 kb on - strand at 1305.968 kb on - strand, within DvMF_1065
Per-strain Table
Position Strand Gene LocusTag Fraction 9 day starvation, 30C remove 1,303,630 + DvMF_1062 0.51 +1.4 1,303,759 - DvMF_1062 0.59 +0.6 1,303,818 + DvMF_1062 0.63 +1.0 1,303,818 + DvMF_1062 0.63 +1.3 1,303,861 - DvMF_1062 0.66 -0.0 1,303,861 - DvMF_1062 0.66 +0.6 1,304,118 + DvMF_1062 0.82 +0.8 1,304,126 - DvMF_1062 0.82 -0.1 1,304,148 + DvMF_1062 0.84 +0.1 1,304,267 + +0.8 1,304,275 - -1.9 1,304,370 + +0.8 1,304,480 + +0.4 1,304,493 - +0.8 1,304,522 + +0.7 1,304,558 + DvMF_1063 0.12 -0.1 1,304,583 - DvMF_1063 0.17 +0.3 1,304,618 - DvMF_1063 0.24 +0.5 1,304,840 - DvMF_1063 0.67 +0.3 1,304,950 + DvMF_1063 0.89 +0.6 1,305,084 - DvMF_1064 0.13 -0.4 1,305,350 - DvMF_1064 0.59 +0.5 1,305,434 + DvMF_1064 0.73 +0.4 1,305,485 - DvMF_1064 0.82 -0.2 1,305,717 - +0.9 1,305,838 + +0.6 1,305,893 + +0.5 1,305,918 + +0.5 1,305,931 - +2.2 1,305,968 - DvMF_1065 0.10 +0.4
Or see this region's nucleotide sequence