Experiment: 9 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1024 and DvMF_1025 are separated by 11 nucleotides DvMF_1025 and DvMF_1026 are separated by 4 nucleotides DvMF_1026 and DvMF_1027 are separated by 26 nucleotides
DvMF_1024: DvMF_1024 - hypothetical protein (RefSeq), at 1,242,732 to 1,244,696
_1024
DvMF_1025: DvMF_1025 - hypothetical protein (RefSeq), at 1,244,708 to 1,245,256
_1025
DvMF_1026: DvMF_1026 - hypothetical protein (RefSeq), at 1,245,261 to 1,245,866
_1026
DvMF_1027: DvMF_1027 - type II and III secretion system protein (RefSeq), at 1,245,893 to 1,247,551
_1027
Position (kb)
1245
1246 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1244.304 kb on + strand, within DvMF_1024 at 1244.309 kb on + strand, within DvMF_1024 at 1244.382 kb on + strand, within DvMF_1024 at 1244.418 kb on + strand, within DvMF_1024 at 1244.467 kb on - strand, within DvMF_1024 at 1244.488 kb on - strand, within DvMF_1024 at 1244.488 kb on - strand, within DvMF_1024 at 1244.677 kb on - strand at 1244.780 kb on + strand, within DvMF_1025 at 1244.947 kb on - strand, within DvMF_1025 at 1245.165 kb on - strand, within DvMF_1025 at 1245.500 kb on - strand, within DvMF_1026 at 1245.677 kb on + strand, within DvMF_1026 at 1245.695 kb on - strand, within DvMF_1026 at 1245.721 kb on + strand, within DvMF_1026 at 1245.738 kb on - strand, within DvMF_1026 at 1245.802 kb on - strand, within DvMF_1026 at 1245.917 kb on + strand at 1245.925 kb on - strand at 1245.975 kb on - strand at 1246.133 kb on + strand, within DvMF_1027 at 1246.165 kb on + strand, within DvMF_1027 at 1246.301 kb on + strand, within DvMF_1027 at 1246.448 kb on + strand, within DvMF_1027
Per-strain Table
Position Strand Gene LocusTag Fraction 9 day starvation, 30C remove 1,244,304 + DvMF_1024 0.80 +0.7 1,244,309 + DvMF_1024 0.80 +0.4 1,244,382 + DvMF_1024 0.84 +0.3 1,244,418 + DvMF_1024 0.86 -0.2 1,244,467 - DvMF_1024 0.88 +1.1 1,244,488 - DvMF_1024 0.89 +0.9 1,244,488 - DvMF_1024 0.89 -0.2 1,244,677 - -0.5 1,244,780 + DvMF_1025 0.13 +0.1 1,244,947 - DvMF_1025 0.44 +0.5 1,245,165 - DvMF_1025 0.83 +0.3 1,245,500 - DvMF_1026 0.39 +0.8 1,245,677 + DvMF_1026 0.69 +1.1 1,245,695 - DvMF_1026 0.72 +0.7 1,245,721 + DvMF_1026 0.76 +0.6 1,245,738 - DvMF_1026 0.79 +0.3 1,245,802 - DvMF_1026 0.89 +0.5 1,245,917 + +1.2 1,245,925 - +3.2 1,245,975 - +0.8 1,246,133 + DvMF_1027 0.14 +0.9 1,246,165 + DvMF_1027 0.16 +0.3 1,246,301 + DvMF_1027 0.25 +1.0 1,246,448 + DvMF_1027 0.33 +0.7
Or see this region's nucleotide sequence