Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0837

Experiment: 9 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0836 and DvMF_0837 are separated by 3 nucleotidesDvMF_0837 and DvMF_0838 are separated by 56 nucleotides DvMF_0836: DvMF_0836 - Hydantoinase/oxoprolinase (RefSeq), at 1,009,355 to 1,011,106 _0836 DvMF_0837: DvMF_0837 - 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq), at 1,011,110 to 1,012,198 _0837 DvMF_0838: DvMF_0838 - hypothetical protein (RefSeq), at 1,012,255 to 1,013,007 _0838 Position (kb) 1011 1012 1013Strain fitness (log2 ratio) -3 -2 -1 0 1at 1010.223 kb on - strand, within DvMF_0836at 1010.331 kb on - strand, within DvMF_0836at 1010.331 kb on - strand, within DvMF_0836at 1010.444 kb on - strand, within DvMF_0836at 1010.467 kb on + strand, within DvMF_0836at 1011.138 kb on - strandat 1011.398 kb on - strand, within DvMF_0837at 1011.737 kb on - strand, within DvMF_0837at 1012.247 kb on - strandat 1012.267 kb on + strandat 1012.365 kb on - strand, within DvMF_0838at 1012.635 kb on + strand, within DvMF_0838at 1012.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 9 day starvation, 30C
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1,010,223 - DvMF_0836 0.50 -2.6
1,010,331 - DvMF_0836 0.56 -3.5
1,010,331 - DvMF_0836 0.56 -2.4
1,010,444 - DvMF_0836 0.62 -2.1
1,010,467 + DvMF_0836 0.63 -2.0
1,011,138 - +0.1
1,011,398 - DvMF_0837 0.26 -0.5
1,011,737 - DvMF_0837 0.58 -0.1
1,012,247 - +0.8
1,012,267 + +0.9
1,012,365 - DvMF_0838 0.15 +1.0
1,012,635 + DvMF_0838 0.50 +0.4
1,012,933 - +0.7

Or see this region's nucleotide sequence