Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_76 and HP15_77 are separated by 443 nucleotides HP15_77 and HP15_78 are separated by 68 nucleotides HP15_78 and HP15_79 are separated by 85 nucleotides HP15_79 and HP15_80 overlap by 8 nucleotides HP15_80 and HP15_81 are separated by 177 nucleotides HP15_81 and HP15_82 are separated by 50 nucleotides
HP15_76: HP15_76 - phage integrase family protein-like protein, at 84,123 to 87,473
_76
HP15_77: HP15_77 - hypothetical protein, at 87,917 to 88,117
_77
HP15_78: HP15_78 - hypothetical protein, at 88,186 to 88,380
_78
HP15_79: HP15_79 - phage integrase family protein, at 88,466 to 89,674
_79
HP15_80: HP15_80 - conserved hypothetical protein, at 89,667 to 89,903
_80
HP15_81: HP15_81 - transcriptional regulator, Cro/CI family protein-like protein, at 90,081 to 90,260
_81
HP15_82: HP15_82 - hypothetical protein, at 90,311 to 90,448
_82
Position (kb) 88
89
90 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 87.500 kb on - strand at 87.537 kb on - strand at 87.617 kb on + strand at 87.617 kb on + strand at 87.717 kb on - strand at 87.854 kb on - strand at 87.872 kb on + strand at 88.120 kb on + strand at 88.120 kb on + strand at 88.120 kb on + strand at 88.128 kb on - strand at 88.149 kb on + strand at 88.152 kb on - strand at 88.197 kb on + strand at 88.252 kb on - strand, within HP15_78 at 88.292 kb on - strand, within HP15_78 at 88.292 kb on - strand, within HP15_78 at 88.380 kb on + strand at 88.423 kb on - strand at 88.463 kb on + strand at 88.610 kb on + strand, within HP15_79 at 88.613 kb on - strand, within HP15_79 at 88.636 kb on + strand, within HP15_79 at 88.732 kb on - strand, within HP15_79 at 88.732 kb on - strand, within HP15_79 at 88.756 kb on - strand, within HP15_79 at 88.814 kb on + strand, within HP15_79 at 88.986 kb on + strand, within HP15_79 at 89.021 kb on - strand, within HP15_79 at 89.063 kb on - strand, within HP15_79 at 89.100 kb on + strand, within HP15_79 at 89.110 kb on + strand, within HP15_79 at 89.439 kb on + strand, within HP15_79 at 89.511 kb on - strand, within HP15_79 at 89.582 kb on + strand at 89.582 kb on + strand at 89.585 kb on - strand at 89.587 kb on - strand at 89.591 kb on + strand at 89.604 kb on - strand at 89.614 kb on - strand at 89.664 kb on + strand at 89.786 kb on + strand, within HP15_80 at 89.786 kb on + strand, within HP15_80 at 89.794 kb on - strand, within HP15_80 at 89.794 kb on - strand, within HP15_80 at 89.796 kb on + strand, within HP15_80 at 89.816 kb on - strand, within HP15_80 at 89.850 kb on - strand, within HP15_80 at 89.876 kb on + strand, within HP15_80 at 89.882 kb on - strand at 90.270 kb on - strand at 90.386 kb on - strand, within HP15_82 at 90.407 kb on - strand, within HP15_82 at 90.410 kb on + strand, within HP15_82 at 90.428 kb on + strand, within HP15_82 at 90.447 kb on + strand at 90.447 kb on + strand at 90.453 kb on - strand at 90.453 kb on - strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.518 kb on - strand at 90.562 kb on - strand at 90.594 kb on - strand at 90.652 kb on - strand at 90.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 87,500 - -1.1 87,537 - +0.3 87,617 + +0.4 87,617 + -0.0 87,717 - -1.5 87,854 - -1.5 87,872 + -0.5 88,120 + +1.1 88,120 + -0.2 88,120 + -1.4 88,128 - +0.1 88,149 + -0.7 88,152 - +0.5 88,197 + +0.1 88,252 - HP15_78 0.34 +0.3 88,292 - HP15_78 0.54 +0.3 88,292 - HP15_78 0.54 -2.2 88,380 + -0.2 88,423 - +0.2 88,463 + -0.6 88,610 + HP15_79 0.12 -0.5 88,613 - HP15_79 0.12 -4.2 88,636 + HP15_79 0.14 -1.2 88,732 - HP15_79 0.22 +0.1 88,732 - HP15_79 0.22 -3.1 88,756 - HP15_79 0.24 -5.1 88,814 + HP15_79 0.29 +0.2 88,986 + HP15_79 0.43 +0.5 89,021 - HP15_79 0.46 -3.9 89,063 - HP15_79 0.49 -5.0 89,100 + HP15_79 0.52 +0.3 89,110 + HP15_79 0.53 -0.9 89,439 + HP15_79 0.80 +1.1 89,511 - HP15_79 0.86 -4.3 89,582 + +0.4 89,582 + +0.4 89,585 - -4.7 89,587 - -4.4 89,591 + +0.2 89,604 - -4.2 89,614 - -3.2 89,664 + -1.5 89,786 + HP15_80 0.50 -0.4 89,786 + HP15_80 0.50 +0.1 89,794 - HP15_80 0.54 -4.0 89,794 - HP15_80 0.54 -0.9 89,796 + HP15_80 0.54 +0.4 89,816 - HP15_80 0.63 -3.1 89,850 - HP15_80 0.77 -1.9 89,876 + HP15_80 0.88 +0.3 89,882 - -4.0 90,270 - -2.4 90,386 - HP15_82 0.54 +1.4 90,407 - HP15_82 0.70 +0.3 90,410 + HP15_82 0.72 -0.6 90,428 + HP15_82 0.85 -0.1 90,447 + -0.2 90,447 + -1.5 90,453 - +1.1 90,453 - +0.3 90,483 + -0.1 90,483 + +0.4 90,483 + -0.6 90,483 + -0.5 90,483 + +1.4 90,483 + +0.4 90,483 + -0.3 90,483 + -0.3 90,491 - +1.0 90,491 - -0.2 90,491 - -1.3 90,491 - -1.1 90,491 - +0.7 90,491 - +0.6 90,518 - -0.5 90,562 - -1.1 90,594 - +0.8 90,652 - -0.4 90,659 - +0.8
Or see this region's nucleotide sequence