Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_734 and HP15_735 overlap by 4 nucleotides HP15_735 and HP15_736 overlap by 1 nucleotides HP15_736 and HP15_737 are separated by 115 nucleotides HP15_737 and HP15_738 overlap by 4 nucleotides HP15_738 and HP15_739 are separated by 178 nucleotides
HP15_734: HP15_734 - septum site-determining protein MinC, at 743,854 to 744,615
_734
HP15_735: HP15_735 - type III effector HopPmaJ, at 744,612 to 745,001
_735
HP15_736: HP15_736 - protein containing DUF1244, at 745,001 to 745,279
_736
HP15_737: HP15_737 - DNA polymerase IV, at 745,395 to 746,459
_737
HP15_738: HP15_738 - phosphoesterase, PA-phosphatase, at 746,456 to 746,791
_738
HP15_739: HP15_739 - glycosyl transferase, group 1 family protein, at 746,970 to 748,190
_739
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 744.418 kb on + strand, within HP15_734 at 744.424 kb on - strand, within HP15_734 at 744.546 kb on - strand at 744.546 kb on - strand at 744.650 kb on + strand at 744.850 kb on - strand, within HP15_735 at 744.889 kb on + strand, within HP15_735 at 744.931 kb on - strand, within HP15_735 at 745.131 kb on + strand, within HP15_736 at 745.131 kb on + strand, within HP15_736 at 745.227 kb on - strand, within HP15_736 at 745.443 kb on + strand at 745.443 kb on + strand at 745.451 kb on - strand at 745.476 kb on - strand at 745.501 kb on - strand at 745.612 kb on - strand, within HP15_737 at 745.639 kb on - strand, within HP15_737 at 745.649 kb on - strand, within HP15_737 at 745.650 kb on - strand, within HP15_737 at 745.731 kb on - strand, within HP15_737 at 745.923 kb on + strand, within HP15_737 at 745.940 kb on + strand, within HP15_737 at 745.986 kb on + strand, within HP15_737 at 745.994 kb on - strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.088 kb on - strand, within HP15_737 at 746.141 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.293 kb on + strand, within HP15_737 at 746.294 kb on - strand, within HP15_737 at 746.404 kb on - strand at 746.461 kb on + strand at 746.471 kb on + strand at 746.497 kb on - strand, within HP15_738 at 746.504 kb on - strand, within HP15_738 at 746.717 kb on + strand, within HP15_738 at 746.774 kb on - strand at 746.795 kb on - strand at 746.797 kb on + strand at 746.907 kb on + strand at 746.912 kb on + strand at 746.976 kb on - strand at 747.097 kb on - strand, within HP15_739 at 747.101 kb on + strand, within HP15_739 at 747.168 kb on - strand, within HP15_739 at 747.170 kb on + strand, within HP15_739 at 747.182 kb on + strand, within HP15_739 at 747.204 kb on + strand, within HP15_739 at 747.238 kb on - strand, within HP15_739
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 744,418 + HP15_734 0.74 +0.1 744,424 - HP15_734 0.75 +0.3 744,546 - -0.0 744,546 - +0.3 744,650 + +1.0 744,850 - HP15_735 0.61 +0.7 744,889 + HP15_735 0.71 -0.4 744,931 - HP15_735 0.82 +0.3 745,131 + HP15_736 0.47 -0.7 745,131 + HP15_736 0.47 -2.0 745,227 - HP15_736 0.81 -0.5 745,443 + +0.1 745,443 + -0.1 745,451 - -2.0 745,476 - -0.1 745,501 - -2.3 745,612 - HP15_737 0.20 -0.1 745,639 - HP15_737 0.23 +0.2 745,649 - HP15_737 0.24 +0.1 745,650 - HP15_737 0.24 +0.1 745,731 - HP15_737 0.32 -0.4 745,923 + HP15_737 0.50 -0.6 745,940 + HP15_737 0.51 +0.2 745,986 + HP15_737 0.55 -0.3 745,994 - HP15_737 0.56 -0.9 746,051 + HP15_737 0.62 -1.0 746,051 + HP15_737 0.62 +0.7 746,088 - HP15_737 0.65 -1.1 746,141 - HP15_737 0.70 +0.9 746,189 - HP15_737 0.75 -0.7 746,189 - HP15_737 0.75 -0.7 746,293 + HP15_737 0.84 -0.5 746,294 - HP15_737 0.84 -0.5 746,404 - -1.5 746,461 + +0.0 746,471 + -0.3 746,497 - HP15_738 0.12 +0.1 746,504 - HP15_738 0.14 +0.2 746,717 + HP15_738 0.78 +3.0 746,774 - +1.9 746,795 - -0.9 746,797 + -0.2 746,907 + -0.5 746,912 + -0.6 746,976 - +0.1 747,097 - HP15_739 0.10 -0.0 747,101 + HP15_739 0.11 +1.1 747,168 - HP15_739 0.16 -1.1 747,170 + HP15_739 0.16 +0.3 747,182 + HP15_739 0.17 -2.5 747,204 + HP15_739 0.19 -0.2 747,238 - HP15_739 0.22 -0.4
Or see this region's nucleotide sequence