Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g172 and HP15_p187g173 overlap by 4 nucleotides HP15_p187g173 and HP15_p187g174 are separated by 15 nucleotides HP15_p187g174 and HP15_p187g175 are separated by 195 nucleotides
HP15_p187g172: HP15_p187g172 - single-stranded-DNA-specific exonuclease RecJ-like protein, at 177,303 to 179,270
_p187g172
HP15_p187g173: HP15_p187g173 - protein containing diguanylate cyclase, predicted domains, at 179,267 to 181,339
_p187g173
HP15_p187g174: HP15_p187g174 - protein containing Type IV pilus assembly PilZ domain, at 181,355 to 181,906
_p187g174
HP15_p187g175: HP15_p187g175 - conserved hypothetical protein, at 182,102 to 182,698
_p187g175
Position (kb) 179
180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 178.291 kb on + strand, within HP15_p187g172 at 178.298 kb on - strand, within HP15_p187g172 at 178.318 kb on - strand, within HP15_p187g172 at 178.351 kb on - strand, within HP15_p187g172 at 178.351 kb on - strand, within HP15_p187g172 at 178.360 kb on + strand, within HP15_p187g172 at 178.360 kb on - strand, within HP15_p187g172 at 178.363 kb on - strand, within HP15_p187g172 at 178.406 kb on + strand, within HP15_p187g172 at 178.406 kb on + strand, within HP15_p187g172 at 178.414 kb on - strand, within HP15_p187g172 at 178.414 kb on - strand, within HP15_p187g172 at 178.414 kb on - strand, within HP15_p187g172 at 178.459 kb on - strand, within HP15_p187g172 at 178.488 kb on + strand, within HP15_p187g172 at 178.552 kb on + strand, within HP15_p187g172 at 178.552 kb on + strand, within HP15_p187g172 at 178.560 kb on - strand, within HP15_p187g172 at 178.625 kb on + strand, within HP15_p187g172 at 178.630 kb on + strand, within HP15_p187g172 at 178.638 kb on - strand, within HP15_p187g172 at 178.638 kb on - strand, within HP15_p187g172 at 178.638 kb on - strand, within HP15_p187g172 at 178.655 kb on - strand, within HP15_p187g172 at 178.678 kb on + strand, within HP15_p187g172 at 178.686 kb on - strand, within HP15_p187g172 at 178.861 kb on - strand, within HP15_p187g172 at 178.906 kb on + strand, within HP15_p187g172 at 178.914 kb on - strand, within HP15_p187g172 at 178.914 kb on - strand, within HP15_p187g172 at 178.939 kb on - strand, within HP15_p187g172 at 178.941 kb on - strand, within HP15_p187g172 at 178.941 kb on - strand, within HP15_p187g172 at 178.952 kb on + strand, within HP15_p187g172 at 178.960 kb on - strand, within HP15_p187g172 at 178.967 kb on + strand, within HP15_p187g172 at 178.977 kb on + strand, within HP15_p187g172 at 178.978 kb on - strand, within HP15_p187g172 at 178.985 kb on - strand, within HP15_p187g172 at 178.994 kb on - strand, within HP15_p187g172 at 179.124 kb on + strand at 179.124 kb on + strand at 179.124 kb on + strand at 179.124 kb on + strand at 179.124 kb on + strand at 179.132 kb on - strand at 179.132 kb on - strand at 179.212 kb on - strand at 179.255 kb on + strand at 179.258 kb on - strand at 179.258 kb on - strand at 179.297 kb on + strand at 179.407 kb on - strand at 179.415 kb on + strand at 179.415 kb on + strand at 179.423 kb on - strand at 179.423 kb on - strand at 179.423 kb on - strand at 179.423 kb on - strand at 179.425 kb on + strand at 179.446 kb on - strand at 179.466 kb on + strand at 179.474 kb on - strand at 179.474 kb on - strand at 179.507 kb on + strand, within HP15_p187g173 at 179.584 kb on - strand, within HP15_p187g173 at 179.676 kb on - strand, within HP15_p187g173 at 179.695 kb on - strand, within HP15_p187g173 at 179.776 kb on + strand, within HP15_p187g173 at 179.776 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.837 kb on + strand, within HP15_p187g173 at 179.847 kb on - strand, within HP15_p187g173 at 179.867 kb on + strand, within HP15_p187g173 at 179.867 kb on + strand, within HP15_p187g173 at 179.877 kb on + strand, within HP15_p187g173 at 179.910 kb on - strand, within HP15_p187g173 at 179.910 kb on - strand, within HP15_p187g173 at 179.928 kb on - strand, within HP15_p187g173 at 179.938 kb on - strand, within HP15_p187g173 at 179.938 kb on - strand, within HP15_p187g173 at 179.969 kb on - strand, within HP15_p187g173 at 180.009 kb on - strand, within HP15_p187g173 at 180.016 kb on + strand, within HP15_p187g173 at 180.129 kb on - strand, within HP15_p187g173 at 180.162 kb on + strand, within HP15_p187g173 at 180.206 kb on - strand, within HP15_p187g173 at 180.307 kb on - strand, within HP15_p187g173 at 180.352 kb on + strand, within HP15_p187g173 at 180.352 kb on + strand, within HP15_p187g173 at 180.359 kb on + strand, within HP15_p187g173 at 180.360 kb on - strand, within HP15_p187g173 at 180.368 kb on - strand, within HP15_p187g173 at 180.387 kb on + strand, within HP15_p187g173 at 180.397 kb on + strand, within HP15_p187g173 at 180.405 kb on - strand, within HP15_p187g173 at 180.405 kb on - strand, within HP15_p187g173 at 180.439 kb on - strand, within HP15_p187g173 at 180.448 kb on + strand, within HP15_p187g173 at 180.487 kb on + strand, within HP15_p187g173 at 180.487 kb on + strand, within HP15_p187g173 at 180.495 kb on - strand, within HP15_p187g173 at 180.495 kb on - strand, within HP15_p187g173 at 180.495 kb on - strand, within HP15_p187g173 at 180.497 kb on - strand, within HP15_p187g173 at 180.499 kb on + strand, within HP15_p187g173 at 180.537 kb on - strand, within HP15_p187g173 at 180.578 kb on - strand, within HP15_p187g173 at 180.632 kb on - strand, within HP15_p187g173 at 180.632 kb on - strand, within HP15_p187g173 at 180.637 kb on + strand, within HP15_p187g173 at 180.637 kb on + strand, within HP15_p187g173 at 180.647 kb on + strand, within HP15_p187g173 at 180.647 kb on + strand, within HP15_p187g173 at 180.654 kb on + strand, within HP15_p187g173 at 180.657 kb on - strand, within HP15_p187g173 at 180.662 kb on - strand, within HP15_p187g173 at 180.664 kb on + strand, within HP15_p187g173 at 180.664 kb on + strand, within HP15_p187g173 at 180.664 kb on + strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.672 kb on - strand, within HP15_p187g173 at 180.677 kb on - strand, within HP15_p187g173 at 180.750 kb on - strand, within HP15_p187g173 at 180.763 kb on - strand, within HP15_p187g173 at 180.763 kb on - strand, within HP15_p187g173 at 180.805 kb on + strand, within HP15_p187g173 at 180.813 kb on - strand, within HP15_p187g173 at 180.825 kb on + strand, within HP15_p187g173 at 180.831 kb on - strand, within HP15_p187g173 at 180.946 kb on + strand, within HP15_p187g173 at 181.005 kb on + strand, within HP15_p187g173 at 181.048 kb on + strand, within HP15_p187g173 at 181.070 kb on + strand, within HP15_p187g173 at 181.094 kb on + strand, within HP15_p187g173 at 181.094 kb on + strand, within HP15_p187g173 at 181.145 kb on - strand at 181.215 kb on + strand at 181.259 kb on + strand at 181.283 kb on - strand at 181.285 kb on + strand at 181.285 kb on + strand at 181.285 kb on + strand at 181.293 kb on - strand at 181.293 kb on - strand at 181.343 kb on + strand at 181.428 kb on - strand, within HP15_p187g174 at 181.465 kb on - strand, within HP15_p187g174 at 181.471 kb on + strand, within HP15_p187g174 at 181.484 kb on + strand, within HP15_p187g174 at 181.501 kb on + strand, within HP15_p187g174 at 181.547 kb on + strand, within HP15_p187g174 at 181.547 kb on + strand, within HP15_p187g174 at 181.555 kb on - strand, within HP15_p187g174 at 181.555 kb on - strand, within HP15_p187g174 at 181.567 kb on + strand, within HP15_p187g174 at 181.570 kb on - strand, within HP15_p187g174 at 181.575 kb on + strand, within HP15_p187g174 at 181.667 kb on + strand, within HP15_p187g174 at 181.685 kb on - strand, within HP15_p187g174 at 181.699 kb on - strand, within HP15_p187g174 at 181.699 kb on - strand, within HP15_p187g174 at 181.717 kb on + strand, within HP15_p187g174 at 181.726 kb on - strand, within HP15_p187g174 at 181.906 kb on - strand at 181.999 kb on + strand at 182.007 kb on - strand at 182.059 kb on + strand at 182.069 kb on + strand at 182.069 kb on + strand at 182.077 kb on - strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.083 kb on + strand at 182.086 kb on - strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.091 kb on - strand at 182.091 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.098 kb on - strand at 182.100 kb on + strand at 182.136 kb on + strand at 182.210 kb on + strand, within HP15_p187g175 at 182.210 kb on + strand, within HP15_p187g175 at 182.251 kb on - strand, within HP15_p187g175
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 178,291 + HP15_p187g172 0.50 +1.0 178,298 - HP15_p187g172 0.51 -0.9 178,318 - HP15_p187g172 0.52 -0.9 178,351 - HP15_p187g172 0.53 +0.2 178,351 - HP15_p187g172 0.53 -1.2 178,360 + HP15_p187g172 0.54 -0.1 178,360 - HP15_p187g172 0.54 +0.8 178,363 - HP15_p187g172 0.54 +1.7 178,406 + HP15_p187g172 0.56 +0.5 178,406 + HP15_p187g172 0.56 +0.4 178,414 - HP15_p187g172 0.56 -0.2 178,414 - HP15_p187g172 0.56 +0.3 178,414 - HP15_p187g172 0.56 +0.5 178,459 - HP15_p187g172 0.59 +0.7 178,488 + HP15_p187g172 0.60 +1.9 178,552 + HP15_p187g172 0.63 -0.1 178,552 + HP15_p187g172 0.63 -0.3 178,560 - HP15_p187g172 0.64 -0.3 178,625 + HP15_p187g172 0.67 -0.6 178,630 + HP15_p187g172 0.67 -0.3 178,638 - HP15_p187g172 0.68 -0.7 178,638 - HP15_p187g172 0.68 -0.2 178,638 - HP15_p187g172 0.68 +0.0 178,655 - HP15_p187g172 0.69 -3.4 178,678 + HP15_p187g172 0.70 -0.0 178,686 - HP15_p187g172 0.70 +0.0 178,861 - HP15_p187g172 0.79 -1.6 178,906 + HP15_p187g172 0.81 +0.3 178,914 - HP15_p187g172 0.82 -0.3 178,914 - HP15_p187g172 0.82 +0.3 178,939 - HP15_p187g172 0.83 -2.6 178,941 - HP15_p187g172 0.83 -1.1 178,941 - HP15_p187g172 0.83 +0.0 178,952 + HP15_p187g172 0.84 -0.1 178,960 - HP15_p187g172 0.84 -0.1 178,967 + HP15_p187g172 0.85 +1.7 178,977 + HP15_p187g172 0.85 +1.2 178,978 - HP15_p187g172 0.85 +0.6 178,985 - HP15_p187g172 0.85 +1.3 178,994 - HP15_p187g172 0.86 +0.4 179,124 + -0.8 179,124 + -0.0 179,124 + -0.7 179,124 + -1.4 179,124 + -0.9 179,132 - +0.8 179,132 - -0.1 179,212 - +0.6 179,255 + +0.7 179,258 - +0.2 179,258 - +0.6 179,297 + +0.0 179,407 - +0.4 179,415 + +0.4 179,415 + +2.2 179,423 - +1.5 179,423 - -0.8 179,423 - -0.2 179,423 - -2.0 179,425 + +0.7 179,446 - +0.1 179,466 + +0.1 179,474 - +0.2 179,474 - +0.5 179,507 + HP15_p187g173 0.12 +0.6 179,584 - HP15_p187g173 0.15 +1.3 179,676 - HP15_p187g173 0.20 -0.5 179,695 - HP15_p187g173 0.21 -0.2 179,776 + HP15_p187g173 0.25 +0.4 179,776 + HP15_p187g173 0.25 -0.3 179,816 + HP15_p187g173 0.26 -0.1 179,816 + HP15_p187g173 0.26 +0.6 179,816 + HP15_p187g173 0.26 +0.7 179,816 + HP15_p187g173 0.26 -0.1 179,824 - HP15_p187g173 0.27 +1.4 179,824 - HP15_p187g173 0.27 +2.0 179,824 - HP15_p187g173 0.27 +0.4 179,824 - HP15_p187g173 0.27 +0.3 179,837 + HP15_p187g173 0.27 -0.2 179,847 - HP15_p187g173 0.28 -0.5 179,867 + HP15_p187g173 0.29 -0.2 179,867 + HP15_p187g173 0.29 -0.2 179,877 + HP15_p187g173 0.29 -0.3 179,910 - HP15_p187g173 0.31 +0.1 179,910 - HP15_p187g173 0.31 +0.7 179,928 - HP15_p187g173 0.32 -0.6 179,938 - HP15_p187g173 0.32 -0.4 179,938 - HP15_p187g173 0.32 -0.6 179,969 - HP15_p187g173 0.34 -0.3 180,009 - HP15_p187g173 0.36 +0.2 180,016 + HP15_p187g173 0.36 -0.3 180,129 - HP15_p187g173 0.42 +4.7 180,162 + HP15_p187g173 0.43 +0.2 180,206 - HP15_p187g173 0.45 -0.8 180,307 - HP15_p187g173 0.50 -0.0 180,352 + HP15_p187g173 0.52 -0.1 180,352 + HP15_p187g173 0.52 +0.1 180,359 + HP15_p187g173 0.53 +0.0 180,360 - HP15_p187g173 0.53 -0.0 180,368 - HP15_p187g173 0.53 +0.5 180,387 + HP15_p187g173 0.54 +0.1 180,397 + HP15_p187g173 0.55 +0.1 180,405 - HP15_p187g173 0.55 +0.5 180,405 - HP15_p187g173 0.55 +0.4 180,439 - HP15_p187g173 0.57 +0.5 180,448 + HP15_p187g173 0.57 +0.2 180,487 + HP15_p187g173 0.59 +0.0 180,487 + HP15_p187g173 0.59 +0.0 180,495 - HP15_p187g173 0.59 -0.7 180,495 - HP15_p187g173 0.59 -1.6 180,495 - HP15_p187g173 0.59 +0.4 180,497 - HP15_p187g173 0.59 +1.2 180,499 + HP15_p187g173 0.59 +0.4 180,537 - HP15_p187g173 0.61 -2.4 180,578 - HP15_p187g173 0.63 -0.5 180,632 - HP15_p187g173 0.66 -0.8 180,632 - HP15_p187g173 0.66 +0.3 180,637 + HP15_p187g173 0.66 -0.6 180,637 + HP15_p187g173 0.66 +0.8 180,647 + HP15_p187g173 0.67 -0.0 180,647 + HP15_p187g173 0.67 -0.0 180,654 + HP15_p187g173 0.67 -0.5 180,657 - HP15_p187g173 0.67 +0.5 180,662 - HP15_p187g173 0.67 +0.2 180,664 + HP15_p187g173 0.67 +1.0 180,664 + HP15_p187g173 0.67 -0.6 180,664 + HP15_p187g173 0.67 +0.0 180,672 - HP15_p187g173 0.68 -1.8 180,672 - HP15_p187g173 0.68 +1.7 180,672 - HP15_p187g173 0.68 +0.3 180,672 - HP15_p187g173 0.68 +0.2 180,672 - HP15_p187g173 0.68 -0.6 180,672 - HP15_p187g173 0.68 -0.3 180,672 - HP15_p187g173 0.68 +0.7 180,672 - HP15_p187g173 0.68 -0.7 180,677 - HP15_p187g173 0.68 +0.2 180,750 - HP15_p187g173 0.72 +0.1 180,763 - HP15_p187g173 0.72 -0.6 180,763 - HP15_p187g173 0.72 -1.0 180,805 + HP15_p187g173 0.74 -0.1 180,813 - HP15_p187g173 0.75 -1.0 180,825 + HP15_p187g173 0.75 -0.3 180,831 - HP15_p187g173 0.75 -0.1 180,946 + HP15_p187g173 0.81 +3.8 181,005 + HP15_p187g173 0.84 -0.0 181,048 + HP15_p187g173 0.86 +0.2 181,070 + HP15_p187g173 0.87 -0.4 181,094 + HP15_p187g173 0.88 +0.4 181,094 + HP15_p187g173 0.88 -0.1 181,145 - +0.1 181,215 + +0.1 181,259 + -1.6 181,283 - -0.3 181,285 + +0.7 181,285 + -0.6 181,285 + +2.7 181,293 - +0.1 181,293 - +0.4 181,343 + -0.4 181,428 - HP15_p187g174 0.13 +0.1 181,465 - HP15_p187g174 0.20 -0.0 181,471 + HP15_p187g174 0.21 -1.8 181,484 + HP15_p187g174 0.23 +0.5 181,501 + HP15_p187g174 0.26 -0.4 181,547 + HP15_p187g174 0.35 -0.0 181,547 + HP15_p187g174 0.35 -0.6 181,555 - HP15_p187g174 0.36 -0.4 181,555 - HP15_p187g174 0.36 -0.2 181,567 + HP15_p187g174 0.38 -0.8 181,570 - HP15_p187g174 0.39 -0.7 181,575 + HP15_p187g174 0.40 -0.6 181,667 + HP15_p187g174 0.57 +0.1 181,685 - HP15_p187g174 0.60 +0.4 181,699 - HP15_p187g174 0.62 +0.6 181,699 - HP15_p187g174 0.62 +0.2 181,717 + HP15_p187g174 0.66 +1.2 181,726 - HP15_p187g174 0.67 -0.5 181,906 - -0.5 181,999 + -1.3 182,007 - -0.2 182,059 + -1.2 182,069 + +0.4 182,069 + -1.0 182,077 - +0.5 182,078 + -0.6 182,078 + -0.9 182,083 + -0.3 182,086 - +0.1 182,088 + -0.2 182,088 + -0.3 182,088 + -2.2 182,091 - -0.0 182,091 - +0.5 182,096 - -0.1 182,096 - +1.1 182,096 - -1.4 182,098 - -0.3 182,100 + +1.4 182,136 + +0.4 182,210 + HP15_p187g175 0.18 +0.4 182,210 + HP15_p187g175 0.18 -1.9 182,251 - HP15_p187g175 0.25 -0.0
Or see this region's nucleotide sequence