Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04290

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04270 and PGA1_c04280 overlap by 1 nucleotidesPGA1_c04280 and PGA1_c04290 are separated by 9 nucleotidesPGA1_c04290 and PGA1_c04300 are separated by 23 nucleotidesPGA1_c04300 and PGA1_c04310 overlap by 19 nucleotides PGA1_c04270: PGA1_c04270 - protein PhnJ, at 413,842 to 414,699 _c04270 PGA1_c04280: PGA1_c04280 - phosphonates transport ATP-binding protein PhnK, at 414,699 to 415,469 _c04280 PGA1_c04290: PGA1_c04290 - phosphonates transport ATP-binding protein PhnL, at 415,479 to 416,162 _c04290 PGA1_c04300: PGA1_c04300 - putative ATP-binding protein PhnN, at 416,186 to 416,731 _c04300 PGA1_c04310: PGA1_c04310 - Protein of unknown function (DUF1045)., at 416,713 to 417,396 _c04310 Position (kb) 415 416 417Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 414.488 kb on - strand, within PGA1_c04270at 414.531 kb on + strand, within PGA1_c04270at 414.531 kb on + strand, within PGA1_c04270at 414.544 kb on - strand, within PGA1_c04270at 414.544 kb on - strand, within PGA1_c04270at 414.573 kb on - strand, within PGA1_c04270at 414.576 kb on - strand, within PGA1_c04270at 414.734 kb on + strandat 414.734 kb on + strandat 414.734 kb on + strandat 414.734 kb on + strandat 414.742 kb on - strandat 414.757 kb on + strandat 414.762 kb on + strandat 414.762 kb on + strandat 414.762 kb on + strandat 414.765 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.792 kb on + strand, within PGA1_c04280at 414.836 kb on + strand, within PGA1_c04280at 414.841 kb on + strand, within PGA1_c04280at 414.842 kb on - strand, within PGA1_c04280at 414.844 kb on + strand, within PGA1_c04280at 414.844 kb on + strand, within PGA1_c04280at 414.850 kb on - strand, within PGA1_c04280at 414.926 kb on + strand, within PGA1_c04280at 414.960 kb on + strand, within PGA1_c04280at 414.960 kb on + strand, within PGA1_c04280at 414.960 kb on + strand, within PGA1_c04280at 415.037 kb on + strand, within PGA1_c04280at 415.037 kb on + strand, within PGA1_c04280at 415.037 kb on + strand, within PGA1_c04280at 415.045 kb on - strand, within PGA1_c04280at 415.078 kb on - strand, within PGA1_c04280at 415.093 kb on + strand, within PGA1_c04280at 415.093 kb on + strand, within PGA1_c04280at 415.101 kb on - strand, within PGA1_c04280at 415.218 kb on + strand, within PGA1_c04280at 415.242 kb on - strand, within PGA1_c04280at 415.291 kb on + strand, within PGA1_c04280at 415.291 kb on + strand, within PGA1_c04280at 415.299 kb on - strand, within PGA1_c04280at 415.387 kb on + strand, within PGA1_c04280at 415.400 kb on - strandat 415.435 kb on - strandat 415.463 kb on + strandat 415.507 kb on + strandat 415.507 kb on + strandat 415.520 kb on - strandat 415.592 kb on + strand, within PGA1_c04290at 415.600 kb on - strand, within PGA1_c04290at 415.679 kb on - strand, within PGA1_c04290at 415.692 kb on - strand, within PGA1_c04290at 415.699 kb on + strand, within PGA1_c04290at 415.767 kb on + strand, within PGA1_c04290at 415.778 kb on - strand, within PGA1_c04290at 415.816 kb on - strand, within PGA1_c04290at 415.852 kb on + strand, within PGA1_c04290at 415.860 kb on - strand, within PGA1_c04290at 415.869 kb on + strand, within PGA1_c04290at 416.002 kb on + strand, within PGA1_c04290at 416.036 kb on - strand, within PGA1_c04290at 416.036 kb on - strand, within PGA1_c04290at 416.062 kb on + strand, within PGA1_c04290at 416.108 kb on + strandat 416.108 kb on + strandat 416.108 kb on + strandat 416.186 kb on - strandat 416.238 kb on + strandat 416.242 kb on + strand, within PGA1_c04300at 416.248 kb on - strand, within PGA1_c04300at 416.304 kb on + strand, within PGA1_c04300at 416.347 kb on + strand, within PGA1_c04300at 416.347 kb on + strand, within PGA1_c04300at 416.355 kb on - strand, within PGA1_c04300at 416.355 kb on - strand, within PGA1_c04300at 416.364 kb on + strand, within PGA1_c04300at 416.372 kb on - strand, within PGA1_c04300at 416.382 kb on - strand, within PGA1_c04300at 416.384 kb on + strand, within PGA1_c04300at 416.384 kb on + strand, within PGA1_c04300at 416.384 kb on + strand, within PGA1_c04300at 416.384 kb on + strand, within PGA1_c04300at 416.384 kb on + strand, within PGA1_c04300at 416.390 kb on + strand, within PGA1_c04300at 416.390 kb on + strand, within PGA1_c04300at 416.390 kb on + strand, within PGA1_c04300at 416.390 kb on + strand, within PGA1_c04300at 416.390 kb on + strand, within PGA1_c04300at 416.392 kb on - strand, within PGA1_c04300at 416.398 kb on - strand, within PGA1_c04300at 416.442 kb on + strand, within PGA1_c04300at 416.445 kb on - strand, within PGA1_c04300at 416.565 kb on + strand, within PGA1_c04300at 416.567 kb on + strand, within PGA1_c04300at 416.573 kb on - strand, within PGA1_c04300at 416.607 kb on + strand, within PGA1_c04300at 416.696 kb on + strandat 417.046 kb on + strand, within PGA1_c04310at 417.054 kb on - strand, within PGA1_c04310at 417.065 kb on - strand, within PGA1_c04310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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414,488 - PGA1_c04270 0.75 -3.5
414,531 + PGA1_c04270 0.80 -2.7
414,531 + PGA1_c04270 0.80 -2.2
414,544 - PGA1_c04270 0.82 -0.9
414,544 - PGA1_c04270 0.82 -2.4
414,573 - PGA1_c04270 0.85 -1.4
414,576 - PGA1_c04270 0.86 -1.4
414,734 + -0.1
414,734 + -2.4
414,734 + -2.8
414,734 + -2.5
414,742 - -1.4
414,757 + -1.9
414,762 + -1.7
414,762 + -2.5
414,762 + -2.9
414,765 - -3.1
414,770 - -1.4
414,770 - -1.5
414,770 - -1.4
414,770 - +1.6
414,770 - -1.4
414,770 - -1.4
414,770 - -1.6
414,770 - -1.9
414,792 + PGA1_c04280 0.12 -2.0
414,836 + PGA1_c04280 0.18 -3.2
414,841 + PGA1_c04280 0.18 -0.8
414,842 - PGA1_c04280 0.19 -3.8
414,844 + PGA1_c04280 0.19 -1.6
414,844 + PGA1_c04280 0.19 -1.7
414,850 - PGA1_c04280 0.20 -1.7
414,926 + PGA1_c04280 0.29 -2.3
414,960 + PGA1_c04280 0.34 -1.5
414,960 + PGA1_c04280 0.34 -1.0
414,960 + PGA1_c04280 0.34 -0.6
415,037 + PGA1_c04280 0.44 +0.6
415,037 + PGA1_c04280 0.44 -2.3
415,037 + PGA1_c04280 0.44 -4.0
415,045 - PGA1_c04280 0.45 -2.9
415,078 - PGA1_c04280 0.49 -0.9
415,093 + PGA1_c04280 0.51 -0.4
415,093 + PGA1_c04280 0.51 -2.2
415,101 - PGA1_c04280 0.52 -2.2
415,218 + PGA1_c04280 0.67 -1.4
415,242 - PGA1_c04280 0.70 -0.9
415,291 + PGA1_c04280 0.77 -2.3
415,291 + PGA1_c04280 0.77 -0.4
415,299 - PGA1_c04280 0.78 -2.8
415,387 + PGA1_c04280 0.89 -3.3
415,400 - -3.4
415,435 - -1.7
415,463 + -1.1
415,507 + -2.9
415,507 + -1.4
415,520 - -2.7
415,592 + PGA1_c04290 0.17 -2.2
415,600 - PGA1_c04290 0.18 -2.9
415,679 - PGA1_c04290 0.29 -2.2
415,692 - PGA1_c04290 0.31 -1.8
415,699 + PGA1_c04290 0.32 -1.8
415,767 + PGA1_c04290 0.42 -3.3
415,778 - PGA1_c04290 0.44 -3.6
415,816 - PGA1_c04290 0.49 -2.3
415,852 + PGA1_c04290 0.55 -3.7
415,860 - PGA1_c04290 0.56 +0.2
415,869 + PGA1_c04290 0.57 -1.9
416,002 + PGA1_c04290 0.76 -0.3
416,036 - PGA1_c04290 0.81 -2.3
416,036 - PGA1_c04290 0.81 -2.4
416,062 + PGA1_c04290 0.85 -0.7
416,108 + -0.4
416,108 + -2.4
416,108 + -0.4
416,186 - -1.3
416,238 + -1.2
416,242 + PGA1_c04300 0.10 -1.4
416,248 - PGA1_c04300 0.11 -3.1
416,304 + PGA1_c04300 0.22 -2.2
416,347 + PGA1_c04300 0.29 -0.1
416,347 + PGA1_c04300 0.29 -1.9
416,355 - PGA1_c04300 0.31 -3.2
416,355 - PGA1_c04300 0.31 -1.5
416,364 + PGA1_c04300 0.33 -3.3
416,372 - PGA1_c04300 0.34 -3.0
416,382 - PGA1_c04300 0.36 +0.0
416,384 + PGA1_c04300 0.36 -1.9
416,384 + PGA1_c04300 0.36 -3.8
416,384 + PGA1_c04300 0.36 -1.9
416,384 + PGA1_c04300 0.36 -1.5
416,384 + PGA1_c04300 0.36 -2.4
416,390 + PGA1_c04300 0.37 -2.7
416,390 + PGA1_c04300 0.37 -0.9
416,390 + PGA1_c04300 0.37 -0.9
416,390 + PGA1_c04300 0.37 -2.8
416,390 + PGA1_c04300 0.37 -0.4
416,392 - PGA1_c04300 0.38 -1.4
416,398 - PGA1_c04300 0.39 -0.4
416,442 + PGA1_c04300 0.47 -1.9
416,445 - PGA1_c04300 0.47 -2.9
416,565 + PGA1_c04300 0.69 -1.7
416,567 + PGA1_c04300 0.70 -2.5
416,573 - PGA1_c04300 0.71 -2.9
416,607 + PGA1_c04300 0.77 -2.9
416,696 + -1.1
417,046 + PGA1_c04310 0.49 -0.1
417,054 - PGA1_c04310 0.50 -1.7
417,065 - PGA1_c04310 0.51 -1.7

Or see this region's nucleotide sequence