Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3946 and HP15_3947 are separated by 160 nucleotides HP15_3947 and HP15_3948 are separated by 2 nucleotides HP15_3948 and HP15_3949 are separated by 79 nucleotides
HP15_3946: HP15_3946 - transcriptional regulator, at 4,176,251 to 4,176,832
_3946
HP15_3947: HP15_3947 - two-component response regulator, at 4,176,993 to 4,177,694
_3947
HP15_3948: HP15_3948 - periplasmic sensor signal transduction histidine kinase, at 4,177,697 to 4,179,196
_3948
HP15_3949: HP15_3949 - bifunctional methionine sulfoxide reductase A/B protein, at 4,179,276 to 4,180,499
_3949
Position (kb)
4177
4178
4179
4180 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4176.717 kb on + strand, within HP15_3946 at 4176.759 kb on + strand, within HP15_3946 at 4176.759 kb on + strand, within HP15_3946 at 4176.759 kb on + strand, within HP15_3946 at 4176.759 kb on + strand, within HP15_3946 at 4176.759 kb on + strand, within HP15_3946 at 4176.767 kb on - strand, within HP15_3946 at 4176.767 kb on - strand, within HP15_3946 at 4176.767 kb on - strand, within HP15_3946 at 4176.767 kb on - strand, within HP15_3946 at 4176.802 kb on + strand at 4176.810 kb on - strand at 4176.905 kb on - strand at 4176.983 kb on + strand at 4176.983 kb on + strand at 4176.991 kb on - strand at 4177.051 kb on - strand at 4177.055 kb on + strand at 4177.084 kb on - strand, within HP15_3947 at 4177.187 kb on - strand, within HP15_3947 at 4177.331 kb on + strand, within HP15_3947 at 4177.359 kb on - strand, within HP15_3947 at 4177.364 kb on + strand, within HP15_3947 at 4177.408 kb on - strand, within HP15_3947 at 4177.552 kb on - strand, within HP15_3947 at 4177.569 kb on - strand, within HP15_3947 at 4177.582 kb on + strand, within HP15_3947 at 4177.603 kb on + strand, within HP15_3947 at 4177.609 kb on - strand, within HP15_3947 at 4177.661 kb on + strand at 4177.670 kb on - strand at 4177.697 kb on - strand at 4177.851 kb on + strand, within HP15_3948 at 4177.858 kb on + strand, within HP15_3948 at 4177.908 kb on + strand, within HP15_3948 at 4177.915 kb on - strand, within HP15_3948 at 4177.966 kb on + strand, within HP15_3948 at 4178.008 kb on + strand, within HP15_3948 at 4178.096 kb on - strand, within HP15_3948 at 4178.103 kb on + strand, within HP15_3948 at 4178.103 kb on + strand, within HP15_3948 at 4178.103 kb on + strand, within HP15_3948 at 4178.170 kb on + strand, within HP15_3948 at 4178.219 kb on - strand, within HP15_3948 at 4178.418 kb on - strand, within HP15_3948 at 4178.476 kb on + strand, within HP15_3948 at 4178.553 kb on - strand, within HP15_3948 at 4178.559 kb on - strand, within HP15_3948 at 4178.589 kb on - strand, within HP15_3948 at 4178.929 kb on + strand, within HP15_3948 at 4178.937 kb on - strand, within HP15_3948 at 4179.038 kb on + strand, within HP15_3948 at 4179.038 kb on + strand, within HP15_3948 at 4179.207 kb on - strand at 4179.335 kb on + strand at 4179.343 kb on + strand at 4179.505 kb on - strand, within HP15_3949 at 4179.575 kb on + strand, within HP15_3949 at 4179.669 kb on - strand, within HP15_3949 at 4179.862 kb on + strand, within HP15_3949 at 4179.877 kb on - strand, within HP15_3949 at 4179.877 kb on - strand, within HP15_3949 at 4179.974 kb on - strand, within HP15_3949 at 4180.100 kb on - strand, within HP15_3949 at 4180.134 kb on + strand, within HP15_3949
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 4,176,717 + HP15_3946 0.80 +1.1 4,176,759 + HP15_3946 0.87 -0.2 4,176,759 + HP15_3946 0.87 +1.1 4,176,759 + HP15_3946 0.87 +1.4 4,176,759 + HP15_3946 0.87 +1.3 4,176,759 + HP15_3946 0.87 +0.4 4,176,767 - HP15_3946 0.89 -0.6 4,176,767 - HP15_3946 0.89 -0.9 4,176,767 - HP15_3946 0.89 -0.2 4,176,767 - HP15_3946 0.89 -0.3 4,176,802 + +0.3 4,176,810 - -0.6 4,176,905 - -0.2 4,176,983 + -0.6 4,176,983 + -0.2 4,176,991 - +1.5 4,177,051 - +0.1 4,177,055 + +0.4 4,177,084 - HP15_3947 0.13 +1.8 4,177,187 - HP15_3947 0.28 +1.0 4,177,331 + HP15_3947 0.48 +0.0 4,177,359 - HP15_3947 0.52 -0.3 4,177,364 + HP15_3947 0.53 +0.4 4,177,408 - HP15_3947 0.59 -0.7 4,177,552 - HP15_3947 0.80 +1.7 4,177,569 - HP15_3947 0.82 +0.1 4,177,582 + HP15_3947 0.84 +0.6 4,177,603 + HP15_3947 0.87 +0.3 4,177,609 - HP15_3947 0.88 -0.1 4,177,661 + +0.3 4,177,670 - -0.1 4,177,697 - +0.7 4,177,851 + HP15_3948 0.10 +0.8 4,177,858 + HP15_3948 0.11 -0.7 4,177,908 + HP15_3948 0.14 -2.2 4,177,915 - HP15_3948 0.15 -1.7 4,177,966 + HP15_3948 0.18 +0.1 4,178,008 + HP15_3948 0.21 +0.4 4,178,096 - HP15_3948 0.27 +0.5 4,178,103 + HP15_3948 0.27 +0.1 4,178,103 + HP15_3948 0.27 +0.1 4,178,103 + HP15_3948 0.27 -0.3 4,178,170 + HP15_3948 0.32 +1.4 4,178,219 - HP15_3948 0.35 -0.4 4,178,418 - HP15_3948 0.48 +2.9 4,178,476 + HP15_3948 0.52 -0.1 4,178,553 - HP15_3948 0.57 +0.6 4,178,559 - HP15_3948 0.57 +0.7 4,178,589 - HP15_3948 0.59 +0.1 4,178,929 + HP15_3948 0.82 +0.2 4,178,937 - HP15_3948 0.83 +0.3 4,179,038 + HP15_3948 0.89 +0.5 4,179,038 + HP15_3948 0.89 -0.4 4,179,207 - -0.1 4,179,335 + +1.4 4,179,343 + -0.2 4,179,505 - HP15_3949 0.19 -0.1 4,179,575 + HP15_3949 0.24 -0.3 4,179,669 - HP15_3949 0.32 -0.1 4,179,862 + HP15_3949 0.48 -0.9 4,179,877 - HP15_3949 0.49 -0.4 4,179,877 - HP15_3949 0.49 -1.6 4,179,974 - HP15_3949 0.57 +0.4 4,180,100 - HP15_3949 0.67 -1.2 4,180,134 + HP15_3949 0.70 +1.2
Or see this region's nucleotide sequence