Strain Fitness in Marinobacter adhaerens HP15 around HP15_3948

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3946 and HP15_3947 are separated by 160 nucleotidesHP15_3947 and HP15_3948 are separated by 2 nucleotidesHP15_3948 and HP15_3949 are separated by 79 nucleotides HP15_3946: HP15_3946 - transcriptional regulator, at 4,176,251 to 4,176,832 _3946 HP15_3947: HP15_3947 - two-component response regulator, at 4,176,993 to 4,177,694 _3947 HP15_3948: HP15_3948 - periplasmic sensor signal transduction histidine kinase, at 4,177,697 to 4,179,196 _3948 HP15_3949: HP15_3949 - bifunctional methionine sulfoxide reductase A/B protein, at 4,179,276 to 4,180,499 _3949 Position (kb) 4177 4178 4179 4180Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4176.717 kb on + strand, within HP15_3946at 4176.759 kb on + strand, within HP15_3946at 4176.759 kb on + strand, within HP15_3946at 4176.759 kb on + strand, within HP15_3946at 4176.759 kb on + strand, within HP15_3946at 4176.759 kb on + strand, within HP15_3946at 4176.767 kb on - strand, within HP15_3946at 4176.767 kb on - strand, within HP15_3946at 4176.767 kb on - strand, within HP15_3946at 4176.767 kb on - strand, within HP15_3946at 4176.802 kb on + strandat 4176.810 kb on - strandat 4176.905 kb on - strandat 4176.983 kb on + strandat 4176.983 kb on + strandat 4176.991 kb on - strandat 4177.051 kb on - strandat 4177.055 kb on + strandat 4177.084 kb on - strand, within HP15_3947at 4177.187 kb on - strand, within HP15_3947at 4177.331 kb on + strand, within HP15_3947at 4177.359 kb on - strand, within HP15_3947at 4177.364 kb on + strand, within HP15_3947at 4177.408 kb on - strand, within HP15_3947at 4177.552 kb on - strand, within HP15_3947at 4177.569 kb on - strand, within HP15_3947at 4177.582 kb on + strand, within HP15_3947at 4177.603 kb on + strand, within HP15_3947at 4177.609 kb on - strand, within HP15_3947at 4177.661 kb on + strandat 4177.670 kb on - strandat 4177.697 kb on - strandat 4177.851 kb on + strand, within HP15_3948at 4177.858 kb on + strand, within HP15_3948at 4177.908 kb on + strand, within HP15_3948at 4177.915 kb on - strand, within HP15_3948at 4177.966 kb on + strand, within HP15_3948at 4178.008 kb on + strand, within HP15_3948at 4178.096 kb on - strand, within HP15_3948at 4178.103 kb on + strand, within HP15_3948at 4178.103 kb on + strand, within HP15_3948at 4178.103 kb on + strand, within HP15_3948at 4178.170 kb on + strand, within HP15_3948at 4178.219 kb on - strand, within HP15_3948at 4178.418 kb on - strand, within HP15_3948at 4178.476 kb on + strand, within HP15_3948at 4178.553 kb on - strand, within HP15_3948at 4178.559 kb on - strand, within HP15_3948at 4178.589 kb on - strand, within HP15_3948at 4178.929 kb on + strand, within HP15_3948at 4178.937 kb on - strand, within HP15_3948at 4179.038 kb on + strand, within HP15_3948at 4179.038 kb on + strand, within HP15_3948at 4179.207 kb on - strandat 4179.335 kb on + strandat 4179.343 kb on + strandat 4179.505 kb on - strand, within HP15_3949at 4179.575 kb on + strand, within HP15_3949at 4179.669 kb on - strand, within HP15_3949at 4179.862 kb on + strand, within HP15_3949at 4179.877 kb on - strand, within HP15_3949at 4179.877 kb on - strand, within HP15_3949at 4179.974 kb on - strand, within HP15_3949at 4180.100 kb on - strand, within HP15_3949at 4180.134 kb on + strand, within HP15_3949

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,176,717 + HP15_3946 0.80 +1.1
4,176,759 + HP15_3946 0.87 -0.2
4,176,759 + HP15_3946 0.87 +1.1
4,176,759 + HP15_3946 0.87 +1.4
4,176,759 + HP15_3946 0.87 +1.3
4,176,759 + HP15_3946 0.87 +0.4
4,176,767 - HP15_3946 0.89 -0.6
4,176,767 - HP15_3946 0.89 -0.9
4,176,767 - HP15_3946 0.89 -0.2
4,176,767 - HP15_3946 0.89 -0.3
4,176,802 + +0.3
4,176,810 - -0.6
4,176,905 - -0.2
4,176,983 + -0.6
4,176,983 + -0.2
4,176,991 - +1.5
4,177,051 - +0.1
4,177,055 + +0.4
4,177,084 - HP15_3947 0.13 +1.8
4,177,187 - HP15_3947 0.28 +1.0
4,177,331 + HP15_3947 0.48 +0.0
4,177,359 - HP15_3947 0.52 -0.3
4,177,364 + HP15_3947 0.53 +0.4
4,177,408 - HP15_3947 0.59 -0.7
4,177,552 - HP15_3947 0.80 +1.7
4,177,569 - HP15_3947 0.82 +0.1
4,177,582 + HP15_3947 0.84 +0.6
4,177,603 + HP15_3947 0.87 +0.3
4,177,609 - HP15_3947 0.88 -0.1
4,177,661 + +0.3
4,177,670 - -0.1
4,177,697 - +0.7
4,177,851 + HP15_3948 0.10 +0.8
4,177,858 + HP15_3948 0.11 -0.7
4,177,908 + HP15_3948 0.14 -2.2
4,177,915 - HP15_3948 0.15 -1.7
4,177,966 + HP15_3948 0.18 +0.1
4,178,008 + HP15_3948 0.21 +0.4
4,178,096 - HP15_3948 0.27 +0.5
4,178,103 + HP15_3948 0.27 +0.1
4,178,103 + HP15_3948 0.27 +0.1
4,178,103 + HP15_3948 0.27 -0.3
4,178,170 + HP15_3948 0.32 +1.4
4,178,219 - HP15_3948 0.35 -0.4
4,178,418 - HP15_3948 0.48 +2.9
4,178,476 + HP15_3948 0.52 -0.1
4,178,553 - HP15_3948 0.57 +0.6
4,178,559 - HP15_3948 0.57 +0.7
4,178,589 - HP15_3948 0.59 +0.1
4,178,929 + HP15_3948 0.82 +0.2
4,178,937 - HP15_3948 0.83 +0.3
4,179,038 + HP15_3948 0.89 +0.5
4,179,038 + HP15_3948 0.89 -0.4
4,179,207 - -0.1
4,179,335 + +1.4
4,179,343 + -0.2
4,179,505 - HP15_3949 0.19 -0.1
4,179,575 + HP15_3949 0.24 -0.3
4,179,669 - HP15_3949 0.32 -0.1
4,179,862 + HP15_3949 0.48 -0.9
4,179,877 - HP15_3949 0.49 -0.4
4,179,877 - HP15_3949 0.49 -1.6
4,179,974 - HP15_3949 0.57 +0.4
4,180,100 - HP15_3949 0.67 -1.2
4,180,134 + HP15_3949 0.70 +1.2

Or see this region's nucleotide sequence