Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01500 and PGA1_262p01510 overlap by 4 nucleotides PGA1_262p01510 and PGA1_262p01520 are separated by 12 nucleotides PGA1_262p01520 and PGA1_262p01530 are separated by 219 nucleotides
PGA1_262p01500: PGA1_262p01500 - sarcosine oxidase subunit alpha, at 163,125 to 166,091
_262p01500
PGA1_262p01510: PGA1_262p01510 - sarcosine oxidase, delta subunit, at 166,088 to 166,396
_262p01510
PGA1_262p01520: PGA1_262p01520 - sarcosine oxidase 3 subunit beta, at 166,409 to 167,659
_262p01520
PGA1_262p01530: PGA1_262p01530 - transcriptional regulator, GntR family, at 167,879 to 169,348
_262p01530
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1 at 165.429 kb on + strand, within PGA1_262p01500 at 165.690 kb on + strand, within PGA1_262p01500 at 165.690 kb on + strand, within PGA1_262p01500 at 165.698 kb on - strand, within PGA1_262p01500 at 165.698 kb on - strand, within PGA1_262p01500 at 165.905 kb on - strand at 165.952 kb on + strand at 165.952 kb on + strand at 166.158 kb on - strand, within PGA1_262p01510 at 166.200 kb on - strand, within PGA1_262p01510 at 166.200 kb on - strand, within PGA1_262p01510 at 166.283 kb on - strand, within PGA1_262p01510 at 166.402 kb on - strand at 166.554 kb on + strand, within PGA1_262p01520 at 166.554 kb on + strand, within PGA1_262p01520 at 166.758 kb on + strand, within PGA1_262p01520 at 166.924 kb on - strand, within PGA1_262p01520 at 166.947 kb on - strand, within PGA1_262p01520 at 166.972 kb on + strand, within PGA1_262p01520 at 167.015 kb on - strand, within PGA1_262p01520 at 167.104 kb on - strand, within PGA1_262p01520 at 167.216 kb on + strand, within PGA1_262p01520 at 167.476 kb on + strand, within PGA1_262p01520 at 167.513 kb on + strand, within PGA1_262p01520 at 167.520 kb on - strand, within PGA1_262p01520 at 167.628 kb on + strand at 167.628 kb on + strand at 167.628 kb on + strand at 167.628 kb on + strand at 167.631 kb on - strand at 167.636 kb on - strand at 167.704 kb on - strand at 167.729 kb on + strand at 167.737 kb on - strand at 167.750 kb on + strand at 167.758 kb on - strand at 167.897 kb on + strand at 167.974 kb on - strand at 168.106 kb on + strand, within PGA1_262p01530 at 168.274 kb on - strand, within PGA1_262p01530 at 168.276 kb on + strand, within PGA1_262p01530 at 168.333 kb on - strand, within PGA1_262p01530 at 168.596 kb on - strand, within PGA1_262p01530
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 165,429 + PGA1_262p01500 0.78 +1.0 165,690 + PGA1_262p01500 0.86 -0.2 165,690 + PGA1_262p01500 0.86 +0.1 165,698 - PGA1_262p01500 0.87 +0.1 165,698 - PGA1_262p01500 0.87 -1.0 165,905 - -0.5 165,952 + -0.8 165,952 + +0.1 166,158 - PGA1_262p01510 0.23 -0.6 166,200 - PGA1_262p01510 0.36 -0.8 166,200 - PGA1_262p01510 0.36 +0.1 166,283 - PGA1_262p01510 0.63 -2.2 166,402 - -0.8 166,554 + PGA1_262p01520 0.12 -0.5 166,554 + PGA1_262p01520 0.12 +0.2 166,758 + PGA1_262p01520 0.28 -0.6 166,924 - PGA1_262p01520 0.41 -1.5 166,947 - PGA1_262p01520 0.43 -0.2 166,972 + PGA1_262p01520 0.45 +0.1 167,015 - PGA1_262p01520 0.48 -0.5 167,104 - PGA1_262p01520 0.56 +0.4 167,216 + PGA1_262p01520 0.65 -0.3 167,476 + PGA1_262p01520 0.85 -0.9 167,513 + PGA1_262p01520 0.88 -1.5 167,520 - PGA1_262p01520 0.89 -1.2 167,628 + -1.2 167,628 + +0.0 167,628 + +1.1 167,628 + -0.2 167,631 - -0.6 167,636 - -0.3 167,704 - +1.1 167,729 + +0.8 167,737 - +0.2 167,750 + -0.4 167,758 - -0.1 167,897 + +0.9 167,974 - -0.6 168,106 + PGA1_262p01530 0.15 -0.2 168,274 - PGA1_262p01530 0.27 -0.4 168,276 + PGA1_262p01530 0.27 +0.1 168,333 - PGA1_262p01530 0.31 +0.7 168,596 - PGA1_262p01530 0.49 +0.7
Or see this region's nucleotide sequence