Strain Fitness in Marinobacter adhaerens HP15 around HP15_365

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_363 and HP15_364 overlap by 4 nucleotidesHP15_364 and HP15_365 are separated by 14 nucleotidesHP15_365 and HP15_tRNA5 are separated by 171 nucleotidesHP15_tRNA5 and HP15_tRNA6 are separated by 39 nucleotidesHP15_tRNA6 and HP15_tRNA7 are separated by 11 nucleotidesHP15_tRNA7 and HP15_tRNA8 are separated by 14 nucleotidesHP15_tRNA8 and HP15_366 are separated by 87 nucleotides HP15_363: HP15_363 - biotin-protein ligase, at 365,292 to 366,257 _363 HP15_364: HP15_364 - type III pantothenate kinase, at 366,254 to 366,988 _364 HP15_365: HP15_365 - conserved hypothetical protein, at 367,003 to 367,518 _365 HP15_tRNA5: HP15_tRNA5 - tRNA-Thr, at 367,690 to 367,764 _tRNA5 HP15_tRNA6: HP15_tRNA6 - tRNA-Tyr, at 367,804 to 367,888 _tRNA6 HP15_tRNA7: HP15_tRNA7 - tRNA-Gly, at 367,900 to 367,974 _tRNA7 HP15_tRNA8: HP15_tRNA8 - tRNA-Thr, at 367,989 to 368,064 _tRNA8 HP15_366: HP15_366 - translation elongation factor Tu, at 368,152 to 369,312 _366 Position (kb) 367 368Strain fitness (log2 ratio) -2 -1 0 1at 366.208 kb on + strandat 366.246 kb on - strandat 367.003 kb on + strandat 367.129 kb on - strand, within HP15_365at 367.182 kb on - strand, within HP15_365at 367.222 kb on - strand, within HP15_365at 367.291 kb on + strand, within HP15_365at 367.299 kb on - strand, within HP15_365at 367.519 kb on + strandat 367.539 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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366,208 + -0.5
366,246 - +0.7
367,003 + -0.7
367,129 - HP15_365 0.24 +0.2
367,182 - HP15_365 0.35 -0.3
367,222 - HP15_365 0.42 -0.2
367,291 + HP15_365 0.56 -0.5
367,299 - HP15_365 0.57 -2.1
367,519 + -0.3
367,539 - +0.4

Or see this region's nucleotide sequence