Strain Fitness in Marinobacter adhaerens HP15 around HP15_3603

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3602 and HP15_3603 are separated by 89 nucleotidesHP15_3603 and HP15_3604 are separated by 161 nucleotides HP15_3602: HP15_3602 - NADH-dependent flavin oxidoreductase, Oye family protein, at 3,797,436 to 3,798,548 _3602 HP15_3603: HP15_3603 - transcriptional regulator, HxlR family, at 3,798,638 to 3,799,108 _3603 HP15_3604: HP15_3604 - outer membrane protein OmpW, at 3,799,270 to 3,799,998 _3604 Position (kb) 3798 3799 3800Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3797.665 kb on - strand, within HP15_3602at 3797.697 kb on + strand, within HP15_3602at 3797.697 kb on + strand, within HP15_3602at 3797.704 kb on - strand, within HP15_3602at 3797.718 kb on + strand, within HP15_3602at 3797.718 kb on + strand, within HP15_3602at 3797.718 kb on + strand, within HP15_3602at 3797.726 kb on - strand, within HP15_3602at 3797.726 kb on - strand, within HP15_3602at 3797.830 kb on - strand, within HP15_3602at 3797.895 kb on + strand, within HP15_3602at 3797.895 kb on + strand, within HP15_3602at 3797.903 kb on - strand, within HP15_3602at 3797.907 kb on - strand, within HP15_3602at 3797.962 kb on - strand, within HP15_3602at 3797.965 kb on + strand, within HP15_3602at 3797.967 kb on + strand, within HP15_3602at 3797.987 kb on + strand, within HP15_3602at 3797.995 kb on - strand, within HP15_3602at 3798.162 kb on + strand, within HP15_3602at 3798.182 kb on + strand, within HP15_3602at 3798.237 kb on - strand, within HP15_3602at 3798.494 kb on + strandat 3798.494 kb on - strandat 3798.562 kb on - strandat 3798.770 kb on + strand, within HP15_3603at 3798.825 kb on + strand, within HP15_3603at 3798.835 kb on + strand, within HP15_3603at 3798.840 kb on + strand, within HP15_3603at 3798.842 kb on + strand, within HP15_3603at 3798.843 kb on - strand, within HP15_3603at 3798.951 kb on - strand, within HP15_3603at 3799.034 kb on + strand, within HP15_3603at 3799.035 kb on + strand, within HP15_3603at 3799.039 kb on + strand, within HP15_3603at 3799.045 kb on + strand, within HP15_3603at 3799.171 kb on + strandat 3799.179 kb on - strandat 3799.267 kb on - strandat 3799.268 kb on - strandat 3799.336 kb on + strandat 3799.336 kb on + strandat 3799.342 kb on - strandat 3799.493 kb on + strand, within HP15_3604at 3799.493 kb on + strand, within HP15_3604at 3799.501 kb on - strand, within HP15_3604at 3799.532 kb on + strand, within HP15_3604at 3799.573 kb on + strand, within HP15_3604at 3799.573 kb on + strand, within HP15_3604at 3799.573 kb on + strand, within HP15_3604at 3799.578 kb on + strand, within HP15_3604at 3799.581 kb on - strand, within HP15_3604at 3799.581 kb on - strand, within HP15_3604at 3799.581 kb on - strand, within HP15_3604at 3799.581 kb on - strand, within HP15_3604at 3799.620 kb on + strand, within HP15_3604at 3799.630 kb on + strand, within HP15_3604at 3799.638 kb on - strand, within HP15_3604at 3799.692 kb on - strand, within HP15_3604at 3799.737 kb on + strand, within HP15_3604at 3799.769 kb on - strand, within HP15_3604at 3799.807 kb on - strand, within HP15_3604at 3799.887 kb on - strand, within HP15_3604at 3799.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,797,665 - HP15_3602 0.21 +1.0
3,797,697 + HP15_3602 0.23 +0.2
3,797,697 + HP15_3602 0.23 +4.2
3,797,704 - HP15_3602 0.24 -2.3
3,797,718 + HP15_3602 0.25 -2.3
3,797,718 + HP15_3602 0.25 +0.7
3,797,718 + HP15_3602 0.25 -0.6
3,797,726 - HP15_3602 0.26 +0.2
3,797,726 - HP15_3602 0.26 -0.9
3,797,830 - HP15_3602 0.35 +0.4
3,797,895 + HP15_3602 0.41 -1.0
3,797,895 + HP15_3602 0.41 -0.4
3,797,903 - HP15_3602 0.42 +0.2
3,797,907 - HP15_3602 0.42 +0.6
3,797,962 - HP15_3602 0.47 +0.4
3,797,965 + HP15_3602 0.48 +0.5
3,797,967 + HP15_3602 0.48 -0.4
3,797,987 + HP15_3602 0.50 +1.3
3,797,995 - HP15_3602 0.50 -2.3
3,798,162 + HP15_3602 0.65 -0.5
3,798,182 + HP15_3602 0.67 -0.6
3,798,237 - HP15_3602 0.72 +0.6
3,798,494 + -0.4
3,798,494 - -0.9
3,798,562 - -0.5
3,798,770 + HP15_3603 0.28 +1.3
3,798,825 + HP15_3603 0.40 +0.3
3,798,835 + HP15_3603 0.42 -0.5
3,798,840 + HP15_3603 0.43 +1.7
3,798,842 + HP15_3603 0.43 +0.5
3,798,843 - HP15_3603 0.44 +0.7
3,798,951 - HP15_3603 0.66 +1.0
3,799,034 + HP15_3603 0.84 +3.2
3,799,035 + HP15_3603 0.84 +0.1
3,799,039 + HP15_3603 0.85 +1.4
3,799,045 + HP15_3603 0.86 +1.1
3,799,171 + +0.2
3,799,179 - -1.5
3,799,267 - -0.2
3,799,268 - -0.3
3,799,336 + -1.4
3,799,336 + +0.7
3,799,342 - +0.7
3,799,493 + HP15_3604 0.31 +1.1
3,799,493 + HP15_3604 0.31 +0.7
3,799,501 - HP15_3604 0.32 -0.8
3,799,532 + HP15_3604 0.36 +0.8
3,799,573 + HP15_3604 0.42 -1.4
3,799,573 + HP15_3604 0.42 -0.1
3,799,573 + HP15_3604 0.42 -1.2
3,799,578 + HP15_3604 0.42 -0.3
3,799,581 - HP15_3604 0.43 -1.5
3,799,581 - HP15_3604 0.43 -0.9
3,799,581 - HP15_3604 0.43 -0.9
3,799,581 - HP15_3604 0.43 +1.3
3,799,620 + HP15_3604 0.48 +0.3
3,799,630 + HP15_3604 0.49 -1.1
3,799,638 - HP15_3604 0.50 -0.6
3,799,692 - HP15_3604 0.58 -0.3
3,799,737 + HP15_3604 0.64 -0.0
3,799,769 - HP15_3604 0.68 -0.7
3,799,807 - HP15_3604 0.74 +1.6
3,799,887 - HP15_3604 0.85 -1.1
3,799,966 - -0.9

Or see this region's nucleotide sequence