Strain Fitness in Marinobacter adhaerens HP15 around HP15_3562

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3560 and HP15_3561 are separated by 148 nucleotidesHP15_3561 and HP15_3562 are separated by 133 nucleotidesHP15_3562 and HP15_3563 are separated by 33 nucleotides HP15_3560: HP15_3560 - poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit, at 3,750,034 to 3,751,185 _3560 HP15_3561: HP15_3561 - haloacid dehalogenase, type II, at 3,751,334 to 3,752,005 _3561 HP15_3562: HP15_3562 - esterase/lipase, at 3,752,139 to 3,753,362 _3562 HP15_3563: HP15_3563 - transcriptional regulator, LysR family protein, at 3,753,396 to 3,754,307 _3563 Position (kb) 3752 3753 3754Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3751.143 kb on - strandat 3751.148 kb on - strandat 3751.180 kb on + strandat 3751.186 kb on + strandat 3751.201 kb on - strandat 3751.272 kb on + strandat 3751.305 kb on + strandat 3751.332 kb on + strandat 3751.340 kb on - strandat 3751.340 kb on - strandat 3751.348 kb on + strandat 3751.348 kb on + strandat 3751.369 kb on - strandat 3751.447 kb on - strand, within HP15_3561at 3751.569 kb on + strand, within HP15_3561at 3751.569 kb on + strand, within HP15_3561at 3751.596 kb on + strand, within HP15_3561at 3751.596 kb on + strand, within HP15_3561at 3751.604 kb on - strand, within HP15_3561at 3751.741 kb on - strand, within HP15_3561at 3751.756 kb on - strand, within HP15_3561at 3751.785 kb on - strand, within HP15_3561at 3751.813 kb on - strand, within HP15_3561at 3751.858 kb on - strand, within HP15_3561at 3751.909 kb on + strand, within HP15_3561at 3751.954 kb on - strandat 3752.011 kb on - strandat 3752.011 kb on - strandat 3752.032 kb on + strandat 3752.037 kb on + strandat 3752.051 kb on + strandat 3752.162 kb on + strandat 3752.171 kb on + strandat 3752.185 kb on - strandat 3752.210 kb on + strandat 3752.218 kb on + strandat 3752.218 kb on + strandat 3752.226 kb on - strandat 3752.288 kb on - strand, within HP15_3562at 3752.320 kb on + strand, within HP15_3562at 3752.366 kb on + strand, within HP15_3562at 3752.370 kb on - strand, within HP15_3562at 3752.472 kb on + strand, within HP15_3562at 3752.682 kb on - strand, within HP15_3562at 3752.746 kb on - strand, within HP15_3562at 3752.746 kb on - strand, within HP15_3562at 3753.029 kb on - strand, within HP15_3562at 3753.034 kb on - strand, within HP15_3562at 3753.061 kb on - strand, within HP15_3562at 3753.236 kb on - strand, within HP15_3562at 3753.250 kb on + strandat 3753.258 kb on - strandat 3753.304 kb on + strandat 3753.496 kb on + strand, within HP15_3563at 3753.504 kb on - strand, within HP15_3563at 3753.504 kb on - strand, within HP15_3563at 3753.525 kb on - strand, within HP15_3563at 3753.542 kb on + strand, within HP15_3563at 3753.588 kb on - strand, within HP15_3563at 3753.611 kb on - strand, within HP15_3563at 3753.611 kb on - strand, within HP15_3563at 3753.613 kb on - strand, within HP15_3563at 3753.629 kb on + strand, within HP15_3563at 3753.653 kb on + strand, within HP15_3563at 3753.653 kb on + strand, within HP15_3563at 3753.731 kb on + strand, within HP15_3563at 3753.754 kb on - strand, within HP15_3563at 3753.754 kb on - strand, within HP15_3563at 3753.789 kb on - strand, within HP15_3563at 3753.979 kb on + strand, within HP15_3563at 3753.984 kb on + strand, within HP15_3563at 3754.017 kb on + strand, within HP15_3563at 3754.181 kb on - strand, within HP15_3563at 3754.232 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,751,143 - +2.7
3,751,148 - -0.4
3,751,180 + +1.1
3,751,186 + +0.8
3,751,201 - -0.8
3,751,272 + -0.1
3,751,305 + +0.0
3,751,332 + +0.7
3,751,340 - -0.4
3,751,340 - -0.2
3,751,348 + +0.1
3,751,348 + -0.2
3,751,369 - +0.1
3,751,447 - HP15_3561 0.17 +0.2
3,751,569 + HP15_3561 0.35 +0.3
3,751,569 + HP15_3561 0.35 -0.6
3,751,596 + HP15_3561 0.39 -0.8
3,751,596 + HP15_3561 0.39 +0.7
3,751,604 - HP15_3561 0.40 +1.2
3,751,741 - HP15_3561 0.61 -0.1
3,751,756 - HP15_3561 0.63 -0.9
3,751,785 - HP15_3561 0.67 +0.1
3,751,813 - HP15_3561 0.71 +0.6
3,751,858 - HP15_3561 0.78 +0.8
3,751,909 + HP15_3561 0.86 +0.0
3,751,954 - -0.4
3,752,011 - +0.1
3,752,011 - -0.0
3,752,032 + +0.1
3,752,037 + -2.0
3,752,051 + +0.7
3,752,162 + +0.9
3,752,171 + +0.2
3,752,185 - +0.3
3,752,210 + -0.7
3,752,218 + -0.3
3,752,218 + +0.8
3,752,226 - +0.8
3,752,288 - HP15_3562 0.12 -1.2
3,752,320 + HP15_3562 0.15 -0.2
3,752,366 + HP15_3562 0.19 -0.1
3,752,370 - HP15_3562 0.19 -0.2
3,752,472 + HP15_3562 0.27 -0.7
3,752,682 - HP15_3562 0.44 -0.3
3,752,746 - HP15_3562 0.50 -0.0
3,752,746 - HP15_3562 0.50 -0.7
3,753,029 - HP15_3562 0.73 -2.8
3,753,034 - HP15_3562 0.73 +0.8
3,753,061 - HP15_3562 0.75 +0.7
3,753,236 - HP15_3562 0.90 +0.1
3,753,250 + -0.4
3,753,258 - -0.9
3,753,304 + +0.3
3,753,496 + HP15_3563 0.11 +1.7
3,753,504 - HP15_3563 0.12 +0.5
3,753,504 - HP15_3563 0.12 -2.2
3,753,525 - HP15_3563 0.14 -0.1
3,753,542 + HP15_3563 0.16 -0.5
3,753,588 - HP15_3563 0.21 -0.8
3,753,611 - HP15_3563 0.24 -1.7
3,753,611 - HP15_3563 0.24 +0.1
3,753,613 - HP15_3563 0.24 -0.3
3,753,629 + HP15_3563 0.26 -1.1
3,753,653 + HP15_3563 0.28 -0.7
3,753,653 + HP15_3563 0.28 -0.8
3,753,731 + HP15_3563 0.37 +0.2
3,753,754 - HP15_3563 0.39 +0.1
3,753,754 - HP15_3563 0.39 -0.6
3,753,789 - HP15_3563 0.43 -0.8
3,753,979 + HP15_3563 0.64 +0.6
3,753,984 + HP15_3563 0.64 +0.7
3,754,017 + HP15_3563 0.68 +0.2
3,754,181 - HP15_3563 0.86 -0.5
3,754,232 + +1.7

Or see this region's nucleotide sequence