Strain Fitness in Marinobacter adhaerens HP15 around HP15_3505

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3502 and HP15_3503 are separated by 3 nucleotidesHP15_3503 and HP15_3504 are separated by 51 nucleotidesHP15_3504 and HP15_3505 are separated by 42 nucleotidesHP15_3505 and HP15_3506 are separated by 284 nucleotides HP15_3502: HP15_3502 - conserved hypothetical protein, at 3,687,148 to 3,688,092 _3502 HP15_3503: HP15_3503 - hypothetical protein, at 3,688,096 to 3,688,455 _3503 HP15_3504: HP15_3504 - histone-like bacterial DNA-binding protein, at 3,688,507 to 3,688,779 _3504 HP15_3505: HP15_3505 - RND type efflux pump involved in aminoglycoside resistance (AdeT), at 3,688,822 to 3,689,787 _3505 HP15_3506: HP15_3506 - dihydroorotase, multifunctional complex type, at 3,690,072 to 3,691,376 _3506 Position (kb) 3688 3689 3690Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3687.871 kb on + strand, within HP15_3502at 3688.011 kb on - strandat 3688.216 kb on + strand, within HP15_3503at 3688.249 kb on + strand, within HP15_3503at 3688.281 kb on - strand, within HP15_3503at 3688.390 kb on - strand, within HP15_3503at 3688.439 kb on + strandat 3688.460 kb on + strandat 3688.473 kb on - strandat 3688.516 kb on + strandat 3688.524 kb on - strandat 3688.535 kb on + strand, within HP15_3504at 3688.636 kb on - strand, within HP15_3504at 3688.667 kb on + strand, within HP15_3504at 3688.720 kb on + strand, within HP15_3504at 3688.757 kb on - strandat 3688.784 kb on + strandat 3688.792 kb on - strandat 3688.798 kb on - strandat 3688.816 kb on - strandat 3689.142 kb on + strand, within HP15_3505at 3689.175 kb on - strand, within HP15_3505at 3689.221 kb on + strand, within HP15_3505at 3689.224 kb on - strand, within HP15_3505at 3689.224 kb on - strand, within HP15_3505at 3689.229 kb on - strand, within HP15_3505at 3689.254 kb on + strand, within HP15_3505at 3689.306 kb on - strand, within HP15_3505at 3689.480 kb on + strand, within HP15_3505at 3689.480 kb on + strand, within HP15_3505at 3689.482 kb on + strand, within HP15_3505at 3689.529 kb on + strand, within HP15_3505at 3689.588 kb on + strand, within HP15_3505at 3689.596 kb on - strand, within HP15_3505at 3689.644 kb on - strand, within HP15_3505at 3689.728 kb on - strandat 3689.752 kb on + strandat 3689.762 kb on - strandat 3689.887 kb on + strandat 3689.915 kb on + strandat 3690.113 kb on + strandat 3690.283 kb on + strand, within HP15_3506at 3690.367 kb on + strand, within HP15_3506at 3690.425 kb on - strand, within HP15_3506at 3690.470 kb on - strand, within HP15_3506at 3690.752 kb on + strand, within HP15_3506

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,687,871 + HP15_3502 0.77 +1.9
3,688,011 - +0.1
3,688,216 + HP15_3503 0.33 +3.0
3,688,249 + HP15_3503 0.42 +0.1
3,688,281 - HP15_3503 0.51 -0.2
3,688,390 - HP15_3503 0.82 -2.4
3,688,439 + -0.3
3,688,460 + +0.7
3,688,473 - -2.2
3,688,516 + +0.7
3,688,524 - +0.3
3,688,535 + HP15_3504 0.10 -0.2
3,688,636 - HP15_3504 0.47 +0.3
3,688,667 + HP15_3504 0.59 +0.0
3,688,720 + HP15_3504 0.78 -0.4
3,688,757 - -1.4
3,688,784 + -0.4
3,688,792 - +1.1
3,688,798 - +0.3
3,688,816 - +0.1
3,689,142 + HP15_3505 0.33 +0.1
3,689,175 - HP15_3505 0.37 -0.6
3,689,221 + HP15_3505 0.41 +0.0
3,689,224 - HP15_3505 0.42 -0.4
3,689,224 - HP15_3505 0.42 +1.2
3,689,229 - HP15_3505 0.42 -0.1
3,689,254 + HP15_3505 0.45 -0.5
3,689,306 - HP15_3505 0.50 -1.1
3,689,480 + HP15_3505 0.68 -0.9
3,689,480 + HP15_3505 0.68 +0.7
3,689,482 + HP15_3505 0.68 -1.1
3,689,529 + HP15_3505 0.73 +0.8
3,689,588 + HP15_3505 0.79 +0.1
3,689,596 - HP15_3505 0.80 -1.6
3,689,644 - HP15_3505 0.85 -0.4
3,689,728 - -1.3
3,689,752 + +0.6
3,689,762 - -1.3
3,689,887 + +1.5
3,689,915 + -0.3
3,690,113 + -3.4
3,690,283 + HP15_3506 0.16 -3.6
3,690,367 + HP15_3506 0.23 -1.4
3,690,425 - HP15_3506 0.27 -2.7
3,690,470 - HP15_3506 0.30 -3.3
3,690,752 + HP15_3506 0.52 -0.9

Or see this region's nucleotide sequence