Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3362 and HP15_3363 are separated by 12 nucleotides HP15_3363 and HP15_3364 overlap by 9 nucleotides HP15_3364 and HP15_3365 are separated by 35 nucleotides
HP15_3362: HP15_3362 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 3,523,777 to 3,526,380
_3362
HP15_3363: HP15_3363 - dihydroxy-acid dehydratase, at 3,526,393 to 3,528,081
_3363
HP15_3364: HP15_3364 - hypothetical protein, at 3,528,073 to 3,528,258
_3364
HP15_3365: HP15_3365 - D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase, at 3,528,294 to 3,530,711
_3365
Position (kb)
3526
3527
3528
3529 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3525.500 kb on + strand, within HP15_3362 at 3525.500 kb on + strand, within HP15_3362 at 3525.576 kb on - strand, within HP15_3362 at 3525.629 kb on + strand, within HP15_3362 at 3525.812 kb on - strand, within HP15_3362 at 3525.965 kb on + strand, within HP15_3362 at 3526.151 kb on - strand at 3526.232 kb on + strand at 3526.270 kb on - strand at 3526.318 kb on - strand at 3526.325 kb on - strand at 3526.330 kb on - strand at 3526.358 kb on + strand at 3526.358 kb on + strand at 3526.374 kb on + strand at 3526.386 kb on + strand at 3526.391 kb on + strand at 3526.391 kb on + strand at 3526.391 kb on + strand at 3526.394 kb on - strand at 3526.399 kb on - strand at 3526.404 kb on - strand at 3526.582 kb on + strand, within HP15_3363 at 3526.585 kb on - strand, within HP15_3363 at 3526.667 kb on + strand, within HP15_3363 at 3526.698 kb on - strand, within HP15_3363 at 3526.698 kb on - strand, within HP15_3363 at 3526.753 kb on + strand at 3526.802 kb on - strand, within HP15_3363 at 3526.880 kb on + strand, within HP15_3363 at 3526.939 kb on + strand, within HP15_3363 at 3527.025 kb on + strand, within HP15_3363 at 3527.219 kb on + strand, within HP15_3363 at 3527.252 kb on - strand, within HP15_3363 at 3527.266 kb on - strand, within HP15_3363 at 3527.398 kb on - strand, within HP15_3363 at 3527.457 kb on + strand, within HP15_3363 at 3527.478 kb on + strand, within HP15_3363 at 3527.523 kb on + strand, within HP15_3363 at 3527.527 kb on - strand, within HP15_3363 at 3527.629 kb on + strand, within HP15_3363 at 3527.631 kb on - strand, within HP15_3363 at 3527.647 kb on + strand, within HP15_3363 at 3527.678 kb on + strand, within HP15_3363 at 3527.763 kb on + strand, within HP15_3363 at 3527.793 kb on + strand, within HP15_3363 at 3527.929 kb on - strand at 3527.995 kb on - strand at 3528.073 kb on - strand at 3528.333 kb on + strand at 3528.369 kb on - strand at 3528.389 kb on - strand at 3528.468 kb on + strand at 3528.480 kb on + strand at 3528.494 kb on - strand at 3528.508 kb on - strand at 3528.534 kb on + strand at 3528.576 kb on + strand, within HP15_3365 at 3528.725 kb on - strand, within HP15_3365 at 3528.725 kb on - strand, within HP15_3365 at 3528.996 kb on + strand, within HP15_3365 at 3529.043 kb on - strand, within HP15_3365 at 3529.043 kb on - strand, within HP15_3365
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,525,500 + HP15_3362 0.66 -0.7 3,525,500 + HP15_3362 0.66 +1.3 3,525,576 - HP15_3362 0.69 -1.5 3,525,629 + HP15_3362 0.71 +0.4 3,525,812 - HP15_3362 0.78 -1.2 3,525,965 + HP15_3362 0.84 -1.8 3,526,151 - +0.3 3,526,232 + +0.1 3,526,270 - +0.3 3,526,318 - -1.4 3,526,325 - -1.1 3,526,330 - +0.5 3,526,358 + +0.0 3,526,358 + -0.3 3,526,374 + -1.4 3,526,386 + -0.3 3,526,391 + +0.3 3,526,391 + -1.1 3,526,391 + +0.1 3,526,394 - -0.6 3,526,399 - -0.6 3,526,404 - +0.8 3,526,582 + HP15_3363 0.11 -0.2 3,526,585 - HP15_3363 0.11 -1.1 3,526,667 + HP15_3363 0.16 +1.5 3,526,698 - HP15_3363 0.18 +0.2 3,526,698 - HP15_3363 0.18 +0.3 3,526,753 + +2.0 3,526,802 - HP15_3363 0.24 +0.5 3,526,880 + HP15_3363 0.29 -0.2 3,526,939 + HP15_3363 0.32 -1.5 3,527,025 + HP15_3363 0.37 -0.2 3,527,219 + HP15_3363 0.49 +0.6 3,527,252 - HP15_3363 0.51 -1.3 3,527,266 - HP15_3363 0.52 -0.5 3,527,398 - HP15_3363 0.60 +3.0 3,527,457 + HP15_3363 0.63 +0.2 3,527,478 + HP15_3363 0.64 +1.0 3,527,523 + HP15_3363 0.67 -2.1 3,527,527 - HP15_3363 0.67 +0.8 3,527,629 + HP15_3363 0.73 +1.0 3,527,631 - HP15_3363 0.73 -0.4 3,527,647 + HP15_3363 0.74 +1.0 3,527,678 + HP15_3363 0.76 -0.1 3,527,763 + HP15_3363 0.81 +0.0 3,527,793 + HP15_3363 0.83 +0.2 3,527,929 - -1.5 3,527,995 - -1.1 3,528,073 - +0.3 3,528,333 + -0.8 3,528,369 - +0.0 3,528,389 - +0.5 3,528,468 + +0.3 3,528,480 + +0.3 3,528,494 - +0.8 3,528,508 - +0.0 3,528,534 + +0.0 3,528,576 + HP15_3365 0.12 +3.5 3,528,725 - HP15_3365 0.18 -0.1 3,528,725 - HP15_3365 0.18 +0.2 3,528,996 + HP15_3365 0.29 +0.3 3,529,043 - HP15_3365 0.31 +2.5 3,529,043 - HP15_3365 0.31 +0.0
Or see this region's nucleotide sequence