Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3249 and HP15_3250 are separated by 224 nucleotides HP15_3250 and HP15_3251 overlap by 1 nucleotides
HP15_3249: HP15_3249 - TRAP-type mannitol/chloroaromatic compound transport system, large permease component, at 3,402,374 to 3,403,669
_3249
HP15_3250: HP15_3250 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,403,894 to 3,405,207
_3250
HP15_3251: HP15_3251 - geranylgeranyl reductase, at 3,405,207 to 3,406,331
_3251
Position (kb)
3403
3404
3405
3406 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3402.907 kb on - strand, within HP15_3249 at 3402.917 kb on - strand, within HP15_3249 at 3403.033 kb on + strand, within HP15_3249 at 3403.070 kb on + strand, within HP15_3249 at 3403.118 kb on + strand, within HP15_3249 at 3403.231 kb on - strand, within HP15_3249 at 3403.240 kb on - strand, within HP15_3249 at 3403.242 kb on + strand, within HP15_3249 at 3403.265 kb on - strand, within HP15_3249 at 3403.275 kb on - strand, within HP15_3249 at 3403.348 kb on - strand, within HP15_3249 at 3403.476 kb on + strand, within HP15_3249 at 3403.476 kb on - strand, within HP15_3249 at 3403.484 kb on - strand, within HP15_3249 at 3403.673 kb on + strand at 3403.686 kb on + strand at 3403.857 kb on + strand at 3403.873 kb on + strand at 3403.873 kb on + strand at 3403.909 kb on + strand at 3403.951 kb on + strand at 3403.998 kb on + strand at 3404.130 kb on + strand, within HP15_3250 at 3404.181 kb on + strand, within HP15_3250 at 3404.189 kb on - strand, within HP15_3250 at 3404.205 kb on + strand, within HP15_3250 at 3404.245 kb on - strand, within HP15_3250 at 3404.283 kb on + strand, within HP15_3250 at 3404.348 kb on - strand, within HP15_3250 at 3404.357 kb on + strand, within HP15_3250 at 3404.415 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.455 kb on - strand, within HP15_3250 at 3404.506 kb on - strand, within HP15_3250 at 3404.506 kb on - strand, within HP15_3250 at 3404.632 kb on - strand, within HP15_3250 at 3404.819 kb on + strand, within HP15_3250 at 3404.946 kb on - strand, within HP15_3250 at 3404.972 kb on - strand, within HP15_3250 at 3404.976 kb on + strand, within HP15_3250 at 3404.984 kb on - strand, within HP15_3250 at 3405.124 kb on + strand at 3405.154 kb on + strand at 3405.204 kb on - strand at 3405.278 kb on - strand at 3405.324 kb on + strand, within HP15_3251 at 3405.332 kb on - strand, within HP15_3251 at 3405.347 kb on - strand, within HP15_3251 at 3405.347 kb on - strand, within HP15_3251 at 3405.351 kb on - strand, within HP15_3251 at 3405.367 kb on - strand, within HP15_3251 at 3405.498 kb on - strand, within HP15_3251 at 3405.565 kb on + strand, within HP15_3251 at 3405.615 kb on - strand, within HP15_3251 at 3405.627 kb on - strand, within HP15_3251 at 3405.652 kb on - strand, within HP15_3251 at 3405.751 kb on + strand, within HP15_3251 at 3405.800 kb on + strand, within HP15_3251 at 3405.802 kb on - strand, within HP15_3251 at 3405.848 kb on + strand, within HP15_3251 at 3405.877 kb on - strand, within HP15_3251 at 3405.924 kb on + strand, within HP15_3251 at 3405.924 kb on + strand, within HP15_3251 at 3405.937 kb on - strand, within HP15_3251 at 3405.959 kb on - strand, within HP15_3251 at 3405.973 kb on - strand, within HP15_3251 at 3406.032 kb on - strand, within HP15_3251 at 3406.128 kb on - strand, within HP15_3251
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,402,907 - HP15_3249 0.41 +0.6 3,402,917 - HP15_3249 0.42 -0.4 3,403,033 + HP15_3249 0.51 +0.1 3,403,070 + HP15_3249 0.54 -0.9 3,403,118 + HP15_3249 0.57 +0.4 3,403,231 - HP15_3249 0.66 -1.1 3,403,240 - HP15_3249 0.67 +0.4 3,403,242 + HP15_3249 0.67 -0.5 3,403,265 - HP15_3249 0.69 +0.1 3,403,275 - HP15_3249 0.70 +0.5 3,403,348 - HP15_3249 0.75 -0.6 3,403,476 + HP15_3249 0.85 +0.3 3,403,476 - HP15_3249 0.85 -1.9 3,403,484 - HP15_3249 0.86 -2.7 3,403,673 + +0.1 3,403,686 + +0.1 3,403,857 + +0.1 3,403,873 + -0.6 3,403,873 + -0.4 3,403,909 + -0.4 3,403,951 + +3.5 3,403,998 + +0.1 3,404,130 + HP15_3250 0.18 +1.2 3,404,181 + HP15_3250 0.22 +4.3 3,404,189 - HP15_3250 0.22 +0.1 3,404,205 + HP15_3250 0.24 -0.5 3,404,245 - HP15_3250 0.27 -0.0 3,404,283 + HP15_3250 0.30 -0.5 3,404,348 - HP15_3250 0.35 +0.2 3,404,357 + HP15_3250 0.35 +0.8 3,404,415 + HP15_3250 0.40 +1.3 3,404,447 + HP15_3250 0.42 +0.3 3,404,447 + HP15_3250 0.42 -0.3 3,404,447 + HP15_3250 0.42 +0.4 3,404,455 - HP15_3250 0.43 -0.2 3,404,506 - HP15_3250 0.47 -0.6 3,404,506 - HP15_3250 0.47 +0.2 3,404,632 - HP15_3250 0.56 +0.5 3,404,819 + HP15_3250 0.70 +0.6 3,404,946 - HP15_3250 0.80 -0.1 3,404,972 - HP15_3250 0.82 +0.3 3,404,976 + HP15_3250 0.82 +0.6 3,404,984 - HP15_3250 0.83 -0.4 3,405,124 + -0.2 3,405,154 + +1.1 3,405,204 - -0.5 3,405,278 - -2.5 3,405,324 + HP15_3251 0.10 +0.1 3,405,332 - HP15_3251 0.11 -0.9 3,405,347 - HP15_3251 0.12 -0.6 3,405,347 - HP15_3251 0.12 +0.2 3,405,351 - HP15_3251 0.13 -0.6 3,405,367 - HP15_3251 0.14 -0.2 3,405,498 - HP15_3251 0.26 +0.3 3,405,565 + HP15_3251 0.32 -0.9 3,405,615 - HP15_3251 0.36 -0.3 3,405,627 - HP15_3251 0.37 -0.4 3,405,652 - HP15_3251 0.40 -0.3 3,405,751 + HP15_3251 0.48 -1.0 3,405,800 + HP15_3251 0.53 -3.1 3,405,802 - HP15_3251 0.53 -1.3 3,405,848 + HP15_3251 0.57 -0.2 3,405,877 - HP15_3251 0.60 -0.2 3,405,924 + HP15_3251 0.64 +3.5 3,405,924 + HP15_3251 0.64 +0.1 3,405,937 - HP15_3251 0.65 +0.1 3,405,959 - HP15_3251 0.67 +0.8 3,405,973 - HP15_3251 0.68 +0.1 3,406,032 - HP15_3251 0.73 -0.4 3,406,128 - HP15_3251 0.82 -0.9
Or see this region's nucleotide sequence