Strain Fitness in Marinobacter adhaerens HP15 around HP15_3185

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3184 and HP15_3185 overlap by 23 nucleotidesHP15_3185 and HP15_3186 are separated by 424 nucleotides HP15_3184: HP15_3184 - two-component system sensor protein, at 3,337,458 to 3,339,719 _3184 HP15_3185: HP15_3185 - conserved hypothetical protein containing DUF1745, at 3,339,697 to 3,340,680 _3185 HP15_3186: HP15_3186 - conserved hypothetical protein, secreted, at 3,341,105 to 3,342,253 _3186 Position (kb) 3339 3340 3341Strain fitness (log2 ratio) -2 -1 0 1 2at 3338.712 kb on - strand, within HP15_3184at 3338.737 kb on - strand, within HP15_3184at 3338.775 kb on - strand, within HP15_3184at 3338.813 kb on + strand, within HP15_3184at 3338.818 kb on + strand, within HP15_3184at 3338.840 kb on + strand, within HP15_3184at 3338.866 kb on - strand, within HP15_3184at 3338.976 kb on - strand, within HP15_3184at 3338.976 kb on - strand, within HP15_3184at 3338.985 kb on - strand, within HP15_3184at 3339.119 kb on - strand, within HP15_3184at 3339.297 kb on + strand, within HP15_3184at 3339.306 kb on - strand, within HP15_3184at 3339.320 kb on - strand, within HP15_3184at 3339.362 kb on - strand, within HP15_3184at 3339.423 kb on - strand, within HP15_3184at 3339.456 kb on + strand, within HP15_3184at 3339.470 kb on - strand, within HP15_3184at 3339.470 kb on - strand, within HP15_3184at 3339.470 kb on - strand, within HP15_3184at 3339.481 kb on + strand, within HP15_3184at 3339.489 kb on - strand, within HP15_3184at 3339.671 kb on + strandat 3339.689 kb on - strandat 3339.833 kb on + strand, within HP15_3185at 3339.866 kb on - strand, within HP15_3185at 3339.895 kb on + strand, within HP15_3185at 3340.116 kb on - strand, within HP15_3185at 3340.141 kb on + strand, within HP15_3185at 3340.190 kb on - strand, within HP15_3185at 3340.190 kb on - strand, within HP15_3185at 3340.190 kb on - strand, within HP15_3185at 3340.226 kb on - strand, within HP15_3185at 3340.235 kb on + strand, within HP15_3185at 3340.235 kb on + strand, within HP15_3185at 3340.274 kb on + strand, within HP15_3185at 3340.274 kb on + strand, within HP15_3185at 3340.304 kb on + strand, within HP15_3185at 3340.334 kb on + strand, within HP15_3185at 3340.400 kb on - strand, within HP15_3185at 3340.427 kb on + strand, within HP15_3185at 3340.462 kb on + strand, within HP15_3185at 3340.502 kb on + strand, within HP15_3185at 3340.550 kb on - strand, within HP15_3185at 3340.597 kb on + strandat 3340.682 kb on + strandat 3340.691 kb on - strandat 3340.706 kb on + strandat 3340.714 kb on - strandat 3340.755 kb on + strandat 3341.024 kb on + strandat 3341.031 kb on - strandat 3341.065 kb on - strandat 3341.103 kb on + strandat 3341.103 kb on + strandat 3341.111 kb on - strandat 3341.130 kb on - strandat 3341.143 kb on + strandat 3341.197 kb on - strandat 3341.333 kb on - strand, within HP15_3186at 3341.505 kb on + strand, within HP15_3186at 3341.531 kb on + strand, within HP15_3186at 3341.544 kb on - strand, within HP15_3186at 3341.552 kb on - strand, within HP15_3186at 3341.559 kb on - strand, within HP15_3186

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,338,712 - HP15_3184 0.55 +1.5
3,338,737 - HP15_3184 0.57 +2.0
3,338,775 - HP15_3184 0.58 +2.7
3,338,813 + HP15_3184 0.60 +2.2
3,338,818 + HP15_3184 0.60 +2.1
3,338,840 + HP15_3184 0.61 +1.1
3,338,866 - HP15_3184 0.62 +1.4
3,338,976 - HP15_3184 0.67 +1.7
3,338,976 - HP15_3184 0.67 +2.0
3,338,985 - HP15_3184 0.68 +1.9
3,339,119 - HP15_3184 0.73 +1.4
3,339,297 + HP15_3184 0.81 +1.6
3,339,306 - HP15_3184 0.82 +0.9
3,339,320 - HP15_3184 0.82 +2.0
3,339,362 - HP15_3184 0.84 +0.7
3,339,423 - HP15_3184 0.87 +0.9
3,339,456 + HP15_3184 0.88 +1.8
3,339,470 - HP15_3184 0.89 +1.6
3,339,470 - HP15_3184 0.89 +1.6
3,339,470 - HP15_3184 0.89 +1.3
3,339,481 + HP15_3184 0.89 +1.7
3,339,489 - HP15_3184 0.90 +1.0
3,339,671 + +1.5
3,339,689 - +2.3
3,339,833 + HP15_3185 0.14 +1.4
3,339,866 - HP15_3185 0.17 +1.1
3,339,895 + HP15_3185 0.20 -1.2
3,340,116 - HP15_3185 0.43 -1.9
3,340,141 + HP15_3185 0.45 +1.7
3,340,190 - HP15_3185 0.50 -0.0
3,340,190 - HP15_3185 0.50 +2.0
3,340,190 - HP15_3185 0.50 +1.1
3,340,226 - HP15_3185 0.54 +1.1
3,340,235 + HP15_3185 0.55 +1.6
3,340,235 + HP15_3185 0.55 +1.1
3,340,274 + HP15_3185 0.59 +1.0
3,340,274 + HP15_3185 0.59 +1.4
3,340,304 + HP15_3185 0.62 +1.2
3,340,334 + HP15_3185 0.65 +1.1
3,340,400 - HP15_3185 0.71 +1.3
3,340,427 + HP15_3185 0.74 +1.5
3,340,462 + HP15_3185 0.78 +1.1
3,340,502 + HP15_3185 0.82 +1.2
3,340,550 - HP15_3185 0.87 +0.4
3,340,597 + +2.2
3,340,682 + +1.6
3,340,691 - +1.1
3,340,706 + +0.2
3,340,714 - +1.5
3,340,755 + +1.4
3,341,024 + +1.8
3,341,031 - +0.6
3,341,065 - -1.2
3,341,103 + +0.5
3,341,103 + -0.1
3,341,111 - -0.6
3,341,130 - -1.3
3,341,143 + -0.5
3,341,197 - -0.9
3,341,333 - HP15_3186 0.20 -0.9
3,341,505 + HP15_3186 0.35 +1.1
3,341,531 + HP15_3186 0.37 +0.9
3,341,544 - HP15_3186 0.38 -0.2
3,341,552 - HP15_3186 0.39 -1.9
3,341,559 - HP15_3186 0.40 -0.3

Or see this region's nucleotide sequence