Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3054 and HP15_3055 are separated by 154 nucleotides HP15_3055 and HP15_3056 are separated by 161 nucleotides
HP15_3054: HP15_3054 - TPR repeat containing protein, at 3,204,696 to 3,205,613
_3054
HP15_3055: HP15_3055 - high-affinity leucine-specific leucine-specific-binding periplasmic protein of high-affinity branched-chain amino acid ABC transporter transport system periplasmic binding protein, at 3,205,768 to 3,206,880
_3055
HP15_3056: HP15_3056 - high-affinity branched-chain amino acid ABC transporter, permease protein, at 3,207,042 to 3,207,965
_3056
Position (kb)
3205
3206
3207 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3204.842 kb on + strand, within HP15_3054 at 3204.860 kb on + strand, within HP15_3054 at 3204.913 kb on + strand, within HP15_3054 at 3205.128 kb on - strand, within HP15_3054 at 3205.257 kb on - strand, within HP15_3054 at 3205.257 kb on - strand, within HP15_3054 at 3205.285 kb on + strand, within HP15_3054 at 3205.305 kb on - strand, within HP15_3054 at 3205.366 kb on - strand, within HP15_3054 at 3205.429 kb on - strand, within HP15_3054 at 3205.545 kb on - strand at 3205.626 kb on - strand at 3205.633 kb on + strand at 3205.641 kb on - strand at 3205.662 kb on - strand at 3205.672 kb on + strand at 3205.672 kb on + strand at 3205.680 kb on - strand at 3205.755 kb on - strand at 3206.023 kb on - strand, within HP15_3055 at 3206.081 kb on + strand, within HP15_3055 at 3206.081 kb on + strand, within HP15_3055 at 3206.081 kb on + strand, within HP15_3055 at 3206.081 kb on + strand, within HP15_3055 at 3206.148 kb on - strand, within HP15_3055 at 3206.250 kb on - strand, within HP15_3055 at 3206.291 kb on - strand, within HP15_3055 at 3206.311 kb on + strand, within HP15_3055 at 3206.395 kb on - strand, within HP15_3055 at 3206.543 kb on - strand, within HP15_3055 at 3206.622 kb on + strand, within HP15_3055 at 3206.668 kb on + strand, within HP15_3055 at 3206.697 kb on - strand, within HP15_3055 at 3206.726 kb on + strand, within HP15_3055 at 3206.726 kb on + strand, within HP15_3055 at 3206.726 kb on + strand, within HP15_3055 at 3206.836 kb on - strand at 3207.021 kb on + strand at 3207.050 kb on - strand at 3207.100 kb on + strand at 3207.277 kb on - strand, within HP15_3056 at 3207.317 kb on - strand, within HP15_3056 at 3207.370 kb on - strand, within HP15_3056 at 3207.492 kb on + strand, within HP15_3056 at 3207.507 kb on - strand, within HP15_3056 at 3207.557 kb on + strand, within HP15_3056 at 3207.709 kb on - strand, within HP15_3056 at 3207.716 kb on - strand, within HP15_3056 at 3207.772 kb on + strand, within HP15_3056 at 3207.868 kb on - strand, within HP15_3056 at 3207.868 kb on - strand, within HP15_3056
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,204,842 + HP15_3054 0.16 -0.1 3,204,860 + HP15_3054 0.18 -0.9 3,204,913 + HP15_3054 0.24 +0.5 3,205,128 - HP15_3054 0.47 +0.3 3,205,257 - HP15_3054 0.61 -0.8 3,205,257 - HP15_3054 0.61 -1.7 3,205,285 + HP15_3054 0.64 -1.3 3,205,305 - HP15_3054 0.66 +0.8 3,205,366 - HP15_3054 0.73 +3.1 3,205,429 - HP15_3054 0.80 +0.3 3,205,545 - +1.0 3,205,626 - +0.7 3,205,633 + +0.8 3,205,641 - +0.1 3,205,662 - +0.8 3,205,672 + +0.8 3,205,672 + +1.3 3,205,680 - +1.7 3,205,755 - +2.0 3,206,023 - HP15_3055 0.23 +1.9 3,206,081 + HP15_3055 0.28 +0.1 3,206,081 + HP15_3055 0.28 +1.4 3,206,081 + HP15_3055 0.28 +2.3 3,206,081 + HP15_3055 0.28 +1.9 3,206,148 - HP15_3055 0.34 +2.3 3,206,250 - HP15_3055 0.43 +2.2 3,206,291 - HP15_3055 0.47 +1.3 3,206,311 + HP15_3055 0.49 +2.0 3,206,395 - HP15_3055 0.56 +3.3 3,206,543 - HP15_3055 0.70 +1.7 3,206,622 + HP15_3055 0.77 +2.0 3,206,668 + HP15_3055 0.81 +1.5 3,206,697 - HP15_3055 0.83 +2.3 3,206,726 + HP15_3055 0.86 +3.1 3,206,726 + HP15_3055 0.86 +2.4 3,206,726 + HP15_3055 0.86 +2.9 3,206,836 - +2.3 3,207,021 + +0.5 3,207,050 - +2.1 3,207,100 + +1.9 3,207,277 - HP15_3056 0.25 +2.1 3,207,317 - HP15_3056 0.30 +2.4 3,207,370 - HP15_3056 0.35 +1.7 3,207,492 + HP15_3056 0.49 +1.6 3,207,507 - HP15_3056 0.50 +2.8 3,207,557 + HP15_3056 0.56 +1.5 3,207,709 - HP15_3056 0.72 +1.1 3,207,716 - HP15_3056 0.73 +2.0 3,207,772 + HP15_3056 0.79 +1.4 3,207,868 - HP15_3056 0.89 +2.1 3,207,868 - HP15_3056 0.89 +1.5
Or see this region's nucleotide sequence