Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3022 and HP15_3023 are separated by 2 nucleotides HP15_3023 and HP15_3024 overlap by 8 nucleotides
HP15_3022: HP15_3022 - protein of unknown function cysteine-rich region domain protein, at 3,165,820 to 3,167,028
_3022
HP15_3023: HP15_3023 - glycolate oxidase FAD binding subunit, at 3,167,031 to 3,168,098
_3023
HP15_3024: HP15_3024 - FAD linked oxidase domain protein, at 3,168,091 to 3,169,563
_3024
Position (kb)
3167
3168
3169 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3166.076 kb on - strand, within HP15_3022 at 3166.146 kb on - strand, within HP15_3022 at 3166.196 kb on - strand, within HP15_3022 at 3166.408 kb on - strand, within HP15_3022 at 3166.416 kb on + strand, within HP15_3022 at 3166.432 kb on - strand, within HP15_3022 at 3166.490 kb on + strand, within HP15_3022 at 3166.490 kb on + strand, within HP15_3022 at 3166.498 kb on - strand, within HP15_3022 at 3166.597 kb on + strand, within HP15_3022 at 3166.669 kb on + strand, within HP15_3022 at 3166.785 kb on - strand at 3166.810 kb on + strand, within HP15_3022 at 3166.839 kb on + strand, within HP15_3022 at 3166.916 kb on - strand at 3167.075 kb on + strand at 3167.083 kb on - strand at 3167.109 kb on + strand at 3167.175 kb on - strand, within HP15_3023 at 3167.180 kb on - strand, within HP15_3023 at 3167.324 kb on - strand, within HP15_3023 at 3167.412 kb on + strand, within HP15_3023 at 3167.456 kb on - strand, within HP15_3023 at 3167.456 kb on - strand, within HP15_3023 at 3167.562 kb on - strand, within HP15_3023 at 3167.562 kb on - strand, within HP15_3023 at 3167.648 kb on - strand, within HP15_3023 at 3167.657 kb on + strand, within HP15_3023 at 3167.657 kb on + strand, within HP15_3023 at 3167.716 kb on + strand, within HP15_3023 at 3167.786 kb on + strand, within HP15_3023 at 3167.806 kb on - strand, within HP15_3023 at 3167.978 kb on - strand, within HP15_3023 at 3168.251 kb on + strand, within HP15_3024 at 3168.259 kb on - strand, within HP15_3024 at 3168.288 kb on + strand, within HP15_3024 at 3168.324 kb on + strand, within HP15_3024 at 3168.391 kb on - strand, within HP15_3024 at 3168.395 kb on - strand, within HP15_3024 at 3168.465 kb on + strand, within HP15_3024 at 3168.473 kb on - strand, within HP15_3024 at 3168.516 kb on + strand, within HP15_3024 at 3168.524 kb on - strand, within HP15_3024 at 3168.587 kb on + strand, within HP15_3024 at 3168.725 kb on + strand, within HP15_3024 at 3168.825 kb on + strand, within HP15_3024 at 3168.872 kb on - strand, within HP15_3024 at 3168.948 kb on + strand, within HP15_3024 at 3168.948 kb on + strand, within HP15_3024 at 3168.969 kb on - strand, within HP15_3024 at 3168.996 kb on + strand, within HP15_3024 at 3169.020 kb on - strand, within HP15_3024 at 3169.065 kb on - strand, within HP15_3024
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,166,076 - HP15_3022 0.21 -1.6 3,166,146 - HP15_3022 0.27 -0.9 3,166,196 - HP15_3022 0.31 -0.9 3,166,408 - HP15_3022 0.49 -0.9 3,166,416 + HP15_3022 0.49 +0.1 3,166,432 - HP15_3022 0.51 -1.4 3,166,490 + HP15_3022 0.55 -1.1 3,166,490 + HP15_3022 0.55 -1.9 3,166,498 - HP15_3022 0.56 -1.3 3,166,597 + HP15_3022 0.64 +2.9 3,166,669 + HP15_3022 0.70 +0.7 3,166,785 - +0.1 3,166,810 + HP15_3022 0.82 -0.8 3,166,839 + HP15_3022 0.84 -0.8 3,166,916 - -2.5 3,167,075 + -1.5 3,167,083 - -0.6 3,167,109 + -0.3 3,167,175 - HP15_3023 0.13 +0.8 3,167,180 - HP15_3023 0.14 -1.4 3,167,324 - HP15_3023 0.27 -1.2 3,167,412 + HP15_3023 0.36 +0.1 3,167,456 - HP15_3023 0.40 -1.9 3,167,456 - HP15_3023 0.40 -2.7 3,167,562 - HP15_3023 0.50 -1.7 3,167,562 - HP15_3023 0.50 +0.1 3,167,648 - HP15_3023 0.58 -2.1 3,167,657 + HP15_3023 0.59 +0.1 3,167,657 + HP15_3023 0.59 -0.7 3,167,716 + HP15_3023 0.64 +0.1 3,167,786 + HP15_3023 0.71 -0.1 3,167,806 - HP15_3023 0.73 -2.7 3,167,978 - HP15_3023 0.89 -3.2 3,168,251 + HP15_3024 0.11 -0.4 3,168,259 - HP15_3024 0.11 -0.8 3,168,288 + HP15_3024 0.13 -1.3 3,168,324 + HP15_3024 0.16 -0.3 3,168,391 - HP15_3024 0.20 -0.3 3,168,395 - HP15_3024 0.21 -1.1 3,168,465 + HP15_3024 0.25 -2.2 3,168,473 - HP15_3024 0.26 -0.9 3,168,516 + HP15_3024 0.29 -2.1 3,168,524 - HP15_3024 0.29 -2.2 3,168,587 + HP15_3024 0.34 -0.9 3,168,725 + HP15_3024 0.43 -2.2 3,168,825 + HP15_3024 0.50 -1.2 3,168,872 - HP15_3024 0.53 -1.1 3,168,948 + HP15_3024 0.58 -0.9 3,168,948 + HP15_3024 0.58 -1.4 3,168,969 - HP15_3024 0.60 -3.7 3,168,996 + HP15_3024 0.61 +1.0 3,169,020 - HP15_3024 0.63 -1.0 3,169,065 - HP15_3024 0.66 -1.6
Or see this region's nucleotide sequence