Strain Fitness in Marinobacter adhaerens HP15 around HP15_3003

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3002 and HP15_3003 are separated by 143 nucleotidesHP15_3003 and HP15_3004 are separated by 144 nucleotidesHP15_3004 and HP15_3005 are separated by 144 nucleotides HP15_3002: HP15_3002 - TonB-dependent receptor, at 3,145,920 to 3,147,929 _3002 HP15_3003: HP15_3003 - protein-export protein SecB, at 3,148,073 to 3,148,576 _3003 HP15_3004: HP15_3004 - rhodanese domain protein, at 3,148,721 to 3,149,137 _3004 HP15_3005: HP15_3005 - phosphoglyceromutase, at 3,149,282 to 3,150,832 _3005 Position (kb) 3148 3149Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3147.074 kb on + strand, within HP15_3002at 3147.219 kb on + strand, within HP15_3002at 3147.264 kb on - strand, within HP15_3002at 3147.493 kb on + strand, within HP15_3002at 3147.517 kb on + strand, within HP15_3002at 3147.609 kb on + strand, within HP15_3002at 3148.196 kb on + strand, within HP15_3003at 3148.289 kb on + strand, within HP15_3003at 3148.331 kb on + strand, within HP15_3003at 3148.388 kb on - strand, within HP15_3003at 3148.388 kb on - strand, within HP15_3003at 3148.395 kb on + strand, within HP15_3003at 3148.470 kb on + strand, within HP15_3003at 3148.487 kb on + strand, within HP15_3003at 3148.609 kb on + strandat 3148.628 kb on + strandat 3148.634 kb on - strandat 3148.641 kb on - strandat 3148.877 kb on - strand, within HP15_3004at 3148.910 kb on + strand, within HP15_3004at 3148.910 kb on + strand, within HP15_3004at 3149.139 kb on + strandat 3149.167 kb on + strandat 3149.167 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
3,147,074 + HP15_3002 0.57 -0.7
3,147,219 + HP15_3002 0.65 -0.1
3,147,264 - HP15_3002 0.67 -1.2
3,147,493 + HP15_3002 0.78 +0.4
3,147,517 + HP15_3002 0.79 +2.4
3,147,609 + HP15_3002 0.84 -0.3
3,148,196 + HP15_3003 0.24 +1.0
3,148,289 + HP15_3003 0.43 +2.4
3,148,331 + HP15_3003 0.51 +5.6
3,148,388 - HP15_3003 0.62 +0.4
3,148,388 - HP15_3003 0.62 +1.3
3,148,395 + HP15_3003 0.64 +1.3
3,148,470 + HP15_3003 0.79 +1.2
3,148,487 + HP15_3003 0.82 +1.4
3,148,609 + +0.8
3,148,628 + +0.1
3,148,634 - -0.5
3,148,641 - -0.4
3,148,877 - HP15_3004 0.37 +0.8
3,148,910 + HP15_3004 0.45 +1.2
3,148,910 + HP15_3004 0.45 +1.3
3,149,139 + +1.3
3,149,167 + +0.5
3,149,167 + -0.1

Or see this region's nucleotide sequence