Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2856 and HP15_2857 are separated by 4 nucleotides HP15_2857 and HP15_2858 are separated by 50 nucleotides HP15_2858 and HP15_2859 are separated by 71 nucleotides HP15_2859 and HP15_2860 are separated by 29 nucleotides
HP15_2856: HP15_2856 - MOSC domain containing protein, at 2,996,955 to 2,997,371
_2856
HP15_2857: HP15_2857 - transcription termination factor rho, at 2,997,376 to 2,998,305
_2857
HP15_2858: HP15_2858 - hypothetical protein, at 2,998,356 to 2,998,508
_2858
HP15_2859: HP15_2859 - nucleoside 2-deoxyribosyltransferase, at 2,998,580 to 2,999,122
_2859
HP15_2860: HP15_2860 - methyltransferase, at 2,999,152 to 2,999,862
_2860
Position (kb)
2998
2999 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2997.365 kb on + strand at 2997.368 kb on - strand at 2997.368 kb on - strand at 2997.372 kb on + strand at 2997.373 kb on - strand at 2997.417 kb on + strand at 2997.477 kb on + strand, within HP15_2857 at 2997.485 kb on - strand, within HP15_2857 at 2997.506 kb on + strand, within HP15_2857 at 2997.551 kb on - strand, within HP15_2857 at 2997.555 kb on + strand, within HP15_2857 at 2997.565 kb on - strand, within HP15_2857 at 2997.649 kb on - strand, within HP15_2857 at 2997.698 kb on - strand, within HP15_2857 at 2997.939 kb on - strand, within HP15_2857 at 2997.941 kb on + strand, within HP15_2857 at 2997.954 kb on - strand, within HP15_2857 at 2997.954 kb on - strand, within HP15_2857 at 2998.015 kb on - strand, within HP15_2857 at 2998.060 kb on - strand, within HP15_2857 at 2998.060 kb on - strand, within HP15_2857 at 2998.145 kb on - strand, within HP15_2857 at 2998.185 kb on + strand, within HP15_2857 at 2998.185 kb on + strand, within HP15_2857 at 2998.270 kb on - strand at 2998.307 kb on + strand at 2998.315 kb on - strand at 2998.406 kb on + strand, within HP15_2858 at 2998.406 kb on + strand, within HP15_2858 at 2998.466 kb on - strand, within HP15_2858 at 2998.550 kb on - strand at 2998.640 kb on + strand, within HP15_2859 at 2998.648 kb on - strand, within HP15_2859 at 2998.695 kb on + strand, within HP15_2859 at 2998.695 kb on + strand, within HP15_2859 at 2998.695 kb on + strand, within HP15_2859 at 2998.703 kb on - strand, within HP15_2859 at 2998.854 kb on - strand, within HP15_2859 at 2998.885 kb on + strand, within HP15_2859 at 2998.885 kb on + strand, within HP15_2859 at 2998.885 kb on + strand, within HP15_2859 at 2998.885 kb on + strand, within HP15_2859 at 2998.893 kb on - strand, within HP15_2859 at 2998.893 kb on - strand, within HP15_2859 at 2998.893 kb on - strand, within HP15_2859 at 2998.893 kb on - strand, within HP15_2859 at 2998.952 kb on - strand, within HP15_2859 at 2998.981 kb on + strand, within HP15_2859 at 2999.046 kb on + strand, within HP15_2859 at 2999.074 kb on - strand at 2999.092 kb on - strand at 2999.094 kb on + strand at 2999.163 kb on + strand at 2999.252 kb on - strand, within HP15_2860 at 2999.331 kb on + strand, within HP15_2860 at 2999.333 kb on - strand, within HP15_2860 at 2999.333 kb on - strand, within HP15_2860 at 2999.387 kb on + strand, within HP15_2860 at 2999.395 kb on - strand, within HP15_2860 at 2999.425 kb on + strand, within HP15_2860 at 2999.483 kb on - strand, within HP15_2860 at 2999.483 kb on - strand, within HP15_2860 at 2999.491 kb on + strand, within HP15_2860 at 2999.499 kb on - strand, within HP15_2860
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,997,365 + -0.4 2,997,368 - +1.5 2,997,368 - -0.9 2,997,372 + -2.1 2,997,373 - -0.0 2,997,417 + -0.9 2,997,477 + HP15_2857 0.11 -0.1 2,997,485 - HP15_2857 0.12 +0.1 2,997,506 + HP15_2857 0.14 +0.4 2,997,551 - HP15_2857 0.19 -0.3 2,997,555 + HP15_2857 0.19 +0.3 2,997,565 - HP15_2857 0.20 -0.8 2,997,649 - HP15_2857 0.29 +0.1 2,997,698 - HP15_2857 0.35 -0.7 2,997,939 - HP15_2857 0.61 +0.2 2,997,941 + HP15_2857 0.61 +1.3 2,997,954 - HP15_2857 0.62 +0.5 2,997,954 - HP15_2857 0.62 -0.1 2,998,015 - HP15_2857 0.69 -0.3 2,998,060 - HP15_2857 0.74 +0.8 2,998,060 - HP15_2857 0.74 -0.3 2,998,145 - HP15_2857 0.83 -0.4 2,998,185 + HP15_2857 0.87 -1.4 2,998,185 + HP15_2857 0.87 +0.1 2,998,270 - +2.5 2,998,307 + -1.1 2,998,315 - -0.8 2,998,406 + HP15_2858 0.33 -0.9 2,998,406 + HP15_2858 0.33 -1.2 2,998,466 - HP15_2858 0.72 -1.7 2,998,550 - +0.4 2,998,640 + HP15_2859 0.11 -0.1 2,998,648 - HP15_2859 0.13 -0.5 2,998,695 + HP15_2859 0.21 +0.1 2,998,695 + HP15_2859 0.21 -1.2 2,998,695 + HP15_2859 0.21 -0.2 2,998,703 - HP15_2859 0.23 -0.9 2,998,854 - HP15_2859 0.50 +0.3 2,998,885 + HP15_2859 0.56 -0.9 2,998,885 + HP15_2859 0.56 -0.9 2,998,885 + HP15_2859 0.56 -0.7 2,998,885 + HP15_2859 0.56 -0.3 2,998,893 - HP15_2859 0.58 +0.1 2,998,893 - HP15_2859 0.58 +0.0 2,998,893 - HP15_2859 0.58 -0.2 2,998,893 - HP15_2859 0.58 -0.2 2,998,952 - HP15_2859 0.69 +0.5 2,998,981 + HP15_2859 0.74 -0.3 2,999,046 + HP15_2859 0.86 +0.3 2,999,074 - +0.4 2,999,092 - +1.1 2,999,094 + +0.3 2,999,163 + +0.5 2,999,252 - HP15_2860 0.14 +1.5 2,999,331 + HP15_2860 0.25 -1.2 2,999,333 - HP15_2860 0.25 -0.6 2,999,333 - HP15_2860 0.25 +0.2 2,999,387 + HP15_2860 0.33 -0.0 2,999,395 - HP15_2860 0.34 -0.8 2,999,425 + HP15_2860 0.38 +0.8 2,999,483 - HP15_2860 0.47 -0.7 2,999,483 - HP15_2860 0.47 -0.6 2,999,491 + HP15_2860 0.48 +0.3 2,999,499 - HP15_2860 0.49 -0.4
Or see this region's nucleotide sequence