Strain Fitness in Marinobacter adhaerens HP15 around HP15_2752

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2751 and HP15_2752 are separated by 52 nucleotidesHP15_2752 and HP15_2753 are separated by 68 nucleotides HP15_2751: HP15_2751 - conserved hypothetical protein, secreted, at 2,904,339 to 2,906,039 _2751 HP15_2752: HP15_2752 - glutathione-regulated potassium-efflux system protein kefC, at 2,906,092 to 2,907,975 _2752 HP15_2753: HP15_2753 - transcriptional regulator protein, LysR family, at 2,908,044 to 2,908,904 _2753 Position (kb) 2906 2907 2908Strain fitness (log2 ratio) -2 -1 0 1 2at 2905.334 kb on - strand, within HP15_2751at 2905.452 kb on + strand, within HP15_2751at 2905.551 kb on + strand, within HP15_2751at 2905.556 kb on + strand, within HP15_2751at 2905.598 kb on + strand, within HP15_2751at 2905.604 kb on + strand, within HP15_2751at 2905.651 kb on + strand, within HP15_2751at 2905.762 kb on + strand, within HP15_2751at 2905.770 kb on - strand, within HP15_2751at 2905.781 kb on + strand, within HP15_2751at 2905.783 kb on + strand, within HP15_2751at 2905.795 kb on + strand, within HP15_2751at 2905.805 kb on + strand, within HP15_2751at 2905.856 kb on - strand, within HP15_2751at 2905.922 kb on + strandat 2905.930 kb on - strandat 2906.063 kb on + strandat 2906.142 kb on + strandat 2906.164 kb on + strandat 2906.167 kb on - strandat 2906.196 kb on - strandat 2906.337 kb on + strand, within HP15_2752at 2906.393 kb on + strand, within HP15_2752at 2906.448 kb on + strand, within HP15_2752at 2906.493 kb on - strand, within HP15_2752at 2906.498 kb on - strand, within HP15_2752at 2906.498 kb on - strand, within HP15_2752at 2906.572 kb on + strand, within HP15_2752at 2906.782 kb on + strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.895 kb on - strand, within HP15_2752at 2906.905 kb on - strand, within HP15_2752at 2906.934 kb on + strand, within HP15_2752at 2907.027 kb on + strand, within HP15_2752at 2907.055 kb on - strand, within HP15_2752at 2907.060 kb on + strand, within HP15_2752at 2907.125 kb on + strand, within HP15_2752at 2907.170 kb on + strand, within HP15_2752at 2907.232 kb on + strand, within HP15_2752at 2907.240 kb on - strand, within HP15_2752at 2907.282 kb on - strand, within HP15_2752at 2907.376 kb on - strand, within HP15_2752at 2907.440 kb on - strand, within HP15_2752at 2907.452 kb on + strand, within HP15_2752at 2907.533 kb on - strand, within HP15_2752at 2907.559 kb on + strand, within HP15_2752at 2907.624 kb on - strand, within HP15_2752at 2907.640 kb on + strand, within HP15_2752at 2907.654 kb on - strand, within HP15_2752at 2907.671 kb on + strand, within HP15_2752at 2907.699 kb on + strand, within HP15_2752at 2907.826 kb on - strandat 2907.893 kb on - strandat 2907.916 kb on + strandat 2907.924 kb on - strandat 2908.099 kb on - strandat 2908.108 kb on - strandat 2908.226 kb on + strand, within HP15_2753at 2908.246 kb on + strand, within HP15_2753at 2908.260 kb on + strand, within HP15_2753at 2908.272 kb on + strand, within HP15_2753at 2908.296 kb on - strand, within HP15_2753at 2908.426 kb on - strand, within HP15_2753at 2908.464 kb on + strand, within HP15_2753at 2908.472 kb on - strand, within HP15_2753at 2908.473 kb on - strand, within HP15_2753at 2908.473 kb on - strand, within HP15_2753at 2908.796 kb on + strand, within HP15_2753at 2908.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,905,334 - HP15_2751 0.58 -0.4
2,905,452 + HP15_2751 0.65 -0.8
2,905,551 + HP15_2751 0.71 +0.0
2,905,556 + HP15_2751 0.72 -0.9
2,905,598 + HP15_2751 0.74 -0.6
2,905,604 + HP15_2751 0.74 +0.2
2,905,651 + HP15_2751 0.77 +0.1
2,905,762 + HP15_2751 0.84 +0.3
2,905,770 - HP15_2751 0.84 -0.5
2,905,781 + HP15_2751 0.85 -0.1
2,905,783 + HP15_2751 0.85 -0.0
2,905,795 + HP15_2751 0.86 +1.1
2,905,805 + HP15_2751 0.86 +0.8
2,905,856 - HP15_2751 0.89 -0.2
2,905,922 + +0.1
2,905,930 - -0.7
2,906,063 + -1.2
2,906,142 + -0.1
2,906,164 + -0.5
2,906,167 - -1.9
2,906,196 - +0.2
2,906,337 + HP15_2752 0.13 +0.5
2,906,393 + HP15_2752 0.16 -0.6
2,906,448 + HP15_2752 0.19 +2.7
2,906,493 - HP15_2752 0.21 +0.7
2,906,498 - HP15_2752 0.22 +0.1
2,906,498 - HP15_2752 0.22 -0.7
2,906,572 + HP15_2752 0.25 -1.6
2,906,782 + HP15_2752 0.37 -0.1
2,906,895 - HP15_2752 0.43 -0.0
2,906,895 - HP15_2752 0.43 -0.0
2,906,895 - HP15_2752 0.43 +0.0
2,906,895 - HP15_2752 0.43 -0.8
2,906,895 - HP15_2752 0.43 -0.2
2,906,895 - HP15_2752 0.43 -1.0
2,906,895 - HP15_2752 0.43 -1.3
2,906,905 - HP15_2752 0.43 +0.1
2,906,934 + HP15_2752 0.45 -0.3
2,907,027 + HP15_2752 0.50 -1.9
2,907,055 - HP15_2752 0.51 +0.0
2,907,060 + HP15_2752 0.51 -0.2
2,907,125 + HP15_2752 0.55 +1.7
2,907,170 + HP15_2752 0.57 -1.5
2,907,232 + HP15_2752 0.61 -0.4
2,907,240 - HP15_2752 0.61 -0.3
2,907,282 - HP15_2752 0.63 -0.6
2,907,376 - HP15_2752 0.68 +0.0
2,907,440 - HP15_2752 0.72 -0.0
2,907,452 + HP15_2752 0.72 -0.3
2,907,533 - HP15_2752 0.76 -1.9
2,907,559 + HP15_2752 0.78 -0.0
2,907,624 - HP15_2752 0.81 -0.6
2,907,640 + HP15_2752 0.82 +0.8
2,907,654 - HP15_2752 0.83 -0.9
2,907,671 + HP15_2752 0.84 -0.3
2,907,699 + HP15_2752 0.85 +1.3
2,907,826 - +0.1
2,907,893 - +1.9
2,907,916 + +0.5
2,907,924 - +1.3
2,908,099 - -0.3
2,908,108 - +1.4
2,908,226 + HP15_2753 0.21 -1.1
2,908,246 + HP15_2753 0.23 -0.2
2,908,260 + HP15_2753 0.25 +0.4
2,908,272 + HP15_2753 0.26 -1.3
2,908,296 - HP15_2753 0.29 -0.7
2,908,426 - HP15_2753 0.44 +0.7
2,908,464 + HP15_2753 0.49 -0.6
2,908,472 - HP15_2753 0.50 -0.5
2,908,473 - HP15_2753 0.50 -0.2
2,908,473 - HP15_2753 0.50 -1.4
2,908,796 + HP15_2753 0.87 -0.1
2,908,877 + +0.6

Or see this region's nucleotide sequence