Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2735 and HP15_2736 are separated by 48 nucleotides HP15_2736 and HP15_2737 are separated by 187 nucleotides HP15_2737 and HP15_2738 are separated by 10 nucleotides
HP15_2735: HP15_2735 - diguanylate cyclase with PAS/PAC sensor, at 2,888,601 to 2,889,539
_2735
HP15_2736: HP15_2736 - pseudoazurin, at 2,889,588 to 2,890,037
_2736
HP15_2737: HP15_2737 - Coq7 family protein, at 2,890,225 to 2,890,803
_2737
HP15_2738: HP15_2738 - hypothetical protein, at 2,890,814 to 2,891,332
_2738
Position (kb)
2889
2890
2891 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2888.622 kb on - strand at 2888.625 kb on + strand at 2888.663 kb on + strand at 2888.748 kb on + strand, within HP15_2735 at 2888.775 kb on - strand, within HP15_2735 at 2888.782 kb on - strand, within HP15_2735 at 2889.051 kb on + strand, within HP15_2735 at 2889.157 kb on - strand, within HP15_2735 at 2889.163 kb on + strand, within HP15_2735 at 2889.179 kb on - strand, within HP15_2735 at 2889.416 kb on - strand, within HP15_2735 at 2889.714 kb on + strand, within HP15_2736 at 2889.720 kb on + strand, within HP15_2736 at 2889.752 kb on + strand, within HP15_2736 at 2889.752 kb on + strand, within HP15_2736 at 2889.773 kb on + strand, within HP15_2736 at 2889.812 kb on - strand, within HP15_2736 at 2889.820 kb on - strand, within HP15_2736 at 2889.822 kb on + strand, within HP15_2736 at 2889.830 kb on + strand, within HP15_2736 at 2889.844 kb on + strand, within HP15_2736 at 2889.846 kb on + strand, within HP15_2736 at 2889.846 kb on + strand, within HP15_2736 at 2889.854 kb on - strand, within HP15_2736 at 2890.006 kb on + strand at 2890.077 kb on + strand at 2890.096 kb on + strand at 2890.120 kb on + strand at 2890.250 kb on - strand at 2890.264 kb on - strand at 2890.332 kb on - strand, within HP15_2737 at 2890.436 kb on + strand, within HP15_2737 at 2890.444 kb on - strand, within HP15_2737 at 2890.444 kb on - strand, within HP15_2737 at 2890.562 kb on - strand, within HP15_2737 at 2890.597 kb on - strand, within HP15_2737 at 2890.662 kb on - strand, within HP15_2737 at 2890.664 kb on - strand, within HP15_2737 at 2890.731 kb on + strand, within HP15_2737 at 2890.943 kb on + strand, within HP15_2738 at 2890.943 kb on + strand, within HP15_2738
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,888,622 - -1.6 2,888,625 + -0.5 2,888,663 + -0.3 2,888,748 + HP15_2735 0.16 +0.8 2,888,775 - HP15_2735 0.19 -0.3 2,888,782 - HP15_2735 0.19 +0.7 2,889,051 + HP15_2735 0.48 -0.9 2,889,157 - HP15_2735 0.59 -0.9 2,889,163 + HP15_2735 0.60 +0.1 2,889,179 - HP15_2735 0.62 +1.3 2,889,416 - HP15_2735 0.87 +0.2 2,889,714 + HP15_2736 0.28 -0.5 2,889,720 + HP15_2736 0.29 -1.0 2,889,752 + HP15_2736 0.36 +1.7 2,889,752 + HP15_2736 0.36 -2.2 2,889,773 + HP15_2736 0.41 +0.7 2,889,812 - HP15_2736 0.50 +0.5 2,889,820 - HP15_2736 0.52 -1.3 2,889,822 + HP15_2736 0.52 -0.3 2,889,830 + HP15_2736 0.54 -1.0 2,889,844 + HP15_2736 0.57 -0.1 2,889,846 + HP15_2736 0.57 +3.1 2,889,846 + HP15_2736 0.57 -0.3 2,889,854 - HP15_2736 0.59 +1.1 2,890,006 + +0.6 2,890,077 + -0.3 2,890,096 + -2.6 2,890,120 + +0.2 2,890,250 - -0.4 2,890,264 - +0.3 2,890,332 - HP15_2737 0.18 +0.1 2,890,436 + HP15_2737 0.36 -1.5 2,890,444 - HP15_2737 0.38 +4.0 2,890,444 - HP15_2737 0.38 +0.0 2,890,562 - HP15_2737 0.58 -0.7 2,890,597 - HP15_2737 0.64 -0.2 2,890,662 - HP15_2737 0.75 +0.1 2,890,664 - HP15_2737 0.76 -1.5 2,890,731 + HP15_2737 0.87 -0.1 2,890,943 + HP15_2738 0.25 -0.2 2,890,943 + HP15_2738 0.25 +0.8
Or see this region's nucleotide sequence