Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_271 and HP15_272 are separated by 6 nucleotides HP15_272 and HP15_273 are separated by 178 nucleotides
HP15_271: HP15_271 - transcriptional regulator, AraC family protein, at 261,941 to 262,978
_271
HP15_272: HP15_272 - biosynthetic arginine decarboxylase, at 262,985 to 264,895
_272
HP15_273: HP15_273 - spermidine synthase, at 265,074 to 265,955
_273
Position (kb) 262
263
264
265 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 262.028 kb on - strand at 262.111 kb on + strand, within HP15_271 at 262.111 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.152 kb on - strand, within HP15_271 at 262.189 kb on - strand, within HP15_271 at 262.261 kb on + strand, within HP15_271 at 262.269 kb on - strand, within HP15_271 at 262.353 kb on + strand, within HP15_271 at 262.361 kb on - strand, within HP15_271 at 262.361 kb on - strand, within HP15_271 at 262.385 kb on - strand, within HP15_271 at 262.528 kb on - strand, within HP15_271 at 262.572 kb on + strand, within HP15_271 at 262.619 kb on - strand, within HP15_271 at 262.684 kb on + strand, within HP15_271 at 262.692 kb on - strand, within HP15_271 at 262.777 kb on - strand, within HP15_271 at 262.802 kb on + strand, within HP15_271 at 262.830 kb on + strand, within HP15_271 at 262.838 kb on - strand, within HP15_271 at 262.848 kb on + strand, within HP15_271 at 262.891 kb on - strand at 262.893 kb on - strand at 262.893 kb on - strand at 263.034 kb on - strand at 263.134 kb on - strand at 263.323 kb on - strand, within HP15_272 at 263.323 kb on - strand, within HP15_272 at 263.447 kb on + strand, within HP15_272 at 263.452 kb on + strand, within HP15_272 at 263.627 kb on + strand, within HP15_272 at 263.635 kb on - strand, within HP15_272 at 263.637 kb on - strand, within HP15_272 at 263.641 kb on - strand, within HP15_272 at 263.692 kb on - strand, within HP15_272 at 263.862 kb on + strand, within HP15_272 at 263.890 kb on + strand, within HP15_272 at 263.967 kb on + strand, within HP15_272 at 264.092 kb on + strand, within HP15_272 at 264.092 kb on + strand, within HP15_272 at 264.105 kb on + strand, within HP15_272 at 264.149 kb on + strand, within HP15_272 at 264.167 kb on + strand, within HP15_272 at 264.342 kb on - strand, within HP15_272 at 264.514 kb on + strand, within HP15_272 at 264.629 kb on + strand, within HP15_272 at 264.658 kb on - strand, within HP15_272 at 264.712 kb on - strand at 264.842 kb on + strand at 264.862 kb on - strand at 264.919 kb on - strand at 265.208 kb on - strand, within HP15_273 at 265.301 kb on - strand, within HP15_273 at 265.400 kb on + strand, within HP15_273 at 265.465 kb on + strand, within HP15_273 at 265.524 kb on + strand, within HP15_273 at 265.542 kb on - strand, within HP15_273 at 265.542 kb on - strand, within HP15_273 at 265.707 kb on + strand, within HP15_273 at 265.722 kb on + strand, within HP15_273 at 265.731 kb on - strand, within HP15_273 at 265.734 kb on + strand, within HP15_273 at 265.742 kb on - strand, within HP15_273 at 265.782 kb on + strand, within HP15_273 at 265.789 kb on - strand, within HP15_273 at 265.895 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 262,028 - +0.2 262,111 + HP15_271 0.16 +0.0 262,111 + HP15_271 0.16 -0.6 262,118 + HP15_271 0.17 -0.2 262,118 + HP15_271 0.17 +0.0 262,118 + HP15_271 0.17 +1.1 262,119 - HP15_271 0.17 -1.0 262,119 - HP15_271 0.17 +1.2 262,119 - HP15_271 0.17 -0.1 262,119 - HP15_271 0.17 +0.2 262,152 - HP15_271 0.20 -0.1 262,189 - HP15_271 0.24 +0.2 262,261 + HP15_271 0.31 -0.9 262,269 - HP15_271 0.32 +0.2 262,353 + HP15_271 0.40 -0.3 262,361 - HP15_271 0.40 -0.0 262,361 - HP15_271 0.40 -0.1 262,385 - HP15_271 0.43 +0.3 262,528 - HP15_271 0.57 -1.0 262,572 + HP15_271 0.61 -1.0 262,619 - HP15_271 0.65 +0.1 262,684 + HP15_271 0.72 -1.2 262,692 - HP15_271 0.72 -0.1 262,777 - HP15_271 0.81 -1.8 262,802 + HP15_271 0.83 +0.2 262,830 + HP15_271 0.86 -0.1 262,838 - HP15_271 0.86 -1.3 262,848 + HP15_271 0.87 -0.3 262,891 - +0.5 262,893 - +0.7 262,893 - -0.7 263,034 - -2.4 263,134 - +1.6 263,323 - HP15_272 0.18 +0.9 263,323 - HP15_272 0.18 +1.6 263,447 + HP15_272 0.24 +2.0 263,452 + HP15_272 0.24 +1.0 263,627 + HP15_272 0.34 +1.0 263,635 - HP15_272 0.34 +1.2 263,637 - HP15_272 0.34 +1.3 263,641 - HP15_272 0.34 -0.8 263,692 - HP15_272 0.37 +0.9 263,862 + HP15_272 0.46 +1.7 263,890 + HP15_272 0.47 +1.3 263,967 + HP15_272 0.51 +1.1 264,092 + HP15_272 0.58 +2.0 264,092 + HP15_272 0.58 +1.8 264,105 + HP15_272 0.59 +2.1 264,149 + HP15_272 0.61 +1.4 264,167 + HP15_272 0.62 +1.2 264,342 - HP15_272 0.71 +2.3 264,514 + HP15_272 0.80 +1.7 264,629 + HP15_272 0.86 +1.5 264,658 - HP15_272 0.88 +1.3 264,712 - +1.5 264,842 + +0.6 264,862 - +1.2 264,919 - +0.6 265,208 - HP15_273 0.15 +1.1 265,301 - HP15_273 0.26 -0.4 265,400 + HP15_273 0.37 +0.9 265,465 + HP15_273 0.44 +2.5 265,524 + HP15_273 0.51 +1.1 265,542 - HP15_273 0.53 +1.2 265,542 - HP15_273 0.53 +1.7 265,707 + HP15_273 0.72 +2.0 265,722 + HP15_273 0.73 +1.1 265,731 - HP15_273 0.74 +0.7 265,734 + HP15_273 0.75 +1.2 265,742 - HP15_273 0.76 +6.1 265,782 + HP15_273 0.80 +0.7 265,789 - HP15_273 0.81 +1.1 265,895 + +1.8
Or see this region's nucleotide sequence