Strain Fitness in Marinobacter adhaerens HP15 around HP15_2182

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2181 and HP15_2182 are separated by 156 nucleotidesHP15_2182 and HP15_2183 are separated by 238 nucleotides HP15_2181: HP15_2181 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,292,902 to 2,294,746 _2181 HP15_2182: HP15_2182 - histone-like bacterial DNA-binding protein, at 2,294,903 to 2,295,175 _2182 HP15_2183: HP15_2183 - DNA-binding ATP-dependent protease La, at 2,295,414 to 2,297,831 _2183 Position (kb) 2294 2295 2296Strain fitness (log2 ratio) -2 -1 0 1 2at 2293.952 kb on - strand, within HP15_2181at 2293.997 kb on - strand, within HP15_2181at 2294.285 kb on + strand, within HP15_2181at 2294.613 kb on + strandat 2294.628 kb on - strandat 2294.722 kb on - strandat 2294.764 kb on + strandat 2294.764 kb on + strandat 2294.779 kb on + strandat 2294.819 kb on - strandat 2295.519 kb on - strandat 2295.524 kb on - strandat 2295.536 kb on - strandat 2295.654 kb on - strandat 2295.773 kb on - strand, within HP15_2183at 2295.820 kb on - strand, within HP15_2183at 2295.934 kb on + strand, within HP15_2183at 2296.118 kb on + strand, within HP15_2183

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
2,293,952 - HP15_2181 0.57 -0.8
2,293,997 - HP15_2181 0.59 -0.5
2,294,285 + HP15_2181 0.75 +0.5
2,294,613 + +0.0
2,294,628 - -1.5
2,294,722 - -1.3
2,294,764 + +0.5
2,294,764 + -0.5
2,294,779 + -0.7
2,294,819 - +1.0
2,295,519 - -1.9
2,295,524 - -0.3
2,295,536 - -1.8
2,295,654 - +2.0
2,295,773 - HP15_2183 0.15 +1.5
2,295,820 - HP15_2183 0.17 +1.4
2,295,934 + HP15_2183 0.22 +2.0
2,296,118 + HP15_2183 0.29 +0.8

Or see this region's nucleotide sequence