Strain Fitness in Marinobacter adhaerens HP15 around HP15_2100

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2099 and HP15_2100 are separated by 6 nucleotidesHP15_2100 and HP15_2101 are separated by 187 nucleotides HP15_2099: HP15_2099 - DEAD/DEAH box helicase domain protein, at 2,198,259 to 2,199,542 _2099 HP15_2100: HP15_2100 - transporting ATPase, at 2,199,549 to 2,200,103 _2100 HP15_2101: HP15_2101 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 2,200,291 to 2,202,186 _2101 Position (kb) 2199 2200 2201Strain fitness (log2 ratio) -2 -1 0 1 2at 2198.604 kb on + strand, within HP15_2099at 2198.628 kb on - strand, within HP15_2099at 2198.638 kb on + strand, within HP15_2099at 2198.638 kb on - strand, within HP15_2099at 2198.646 kb on - strand, within HP15_2099at 2198.732 kb on - strand, within HP15_2099at 2198.801 kb on + strand, within HP15_2099at 2198.910 kb on + strand, within HP15_2099at 2198.910 kb on - strand, within HP15_2099at 2198.930 kb on + strand, within HP15_2099at 2199.110 kb on - strand, within HP15_2099at 2199.373 kb on + strand, within HP15_2099at 2199.373 kb on + strand, within HP15_2099at 2199.409 kb on + strand, within HP15_2099at 2199.409 kb on + strand, within HP15_2099at 2199.429 kb on + strandat 2199.429 kb on - strandat 2199.538 kb on - strandat 2199.577 kb on + strandat 2199.703 kb on - strand, within HP15_2100at 2199.751 kb on - strand, within HP15_2100at 2199.829 kb on + strand, within HP15_2100at 2199.884 kb on + strand, within HP15_2100at 2199.894 kb on + strand, within HP15_2100at 2200.032 kb on + strand, within HP15_2100at 2200.064 kb on - strandat 2200.202 kb on - strandat 2200.258 kb on - strandat 2200.467 kb on + strandat 2200.539 kb on - strand, within HP15_2101at 2200.922 kb on - strand, within HP15_2101

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,198,604 + HP15_2099 0.27 +1.4
2,198,628 - HP15_2099 0.29 +0.2
2,198,638 + HP15_2099 0.30 +1.7
2,198,638 - HP15_2099 0.30 +2.1
2,198,646 - HP15_2099 0.30 +1.8
2,198,732 - HP15_2099 0.37 +0.7
2,198,801 + HP15_2099 0.42 -1.3
2,198,910 + HP15_2099 0.51 -0.0
2,198,910 - HP15_2099 0.51 +1.0
2,198,930 + HP15_2099 0.52 +0.9
2,199,110 - HP15_2099 0.66 +1.0
2,199,373 + HP15_2099 0.87 -0.0
2,199,373 + HP15_2099 0.87 +0.7
2,199,409 + HP15_2099 0.90 +0.9
2,199,409 + HP15_2099 0.90 +1.0
2,199,429 + -0.5
2,199,429 - +1.3
2,199,538 - +1.8
2,199,577 + -2.4
2,199,703 - HP15_2100 0.28 +0.5
2,199,751 - HP15_2100 0.36 -0.6
2,199,829 + HP15_2100 0.50 +0.8
2,199,884 + HP15_2100 0.60 -0.4
2,199,894 + HP15_2100 0.62 +1.5
2,200,032 + HP15_2100 0.87 +0.8
2,200,064 - -0.6
2,200,202 - +2.0
2,200,258 - -0.9
2,200,467 + +0.1
2,200,539 - HP15_2101 0.13 -1.0
2,200,922 - HP15_2101 0.33 -0.4

Or see this region's nucleotide sequence