Strain Fitness in Marinobacter adhaerens HP15 around HP15_1992

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1988 and HP15_1989 overlap by 4 nucleotidesHP15_1989 and HP15_1990 overlap by 1 nucleotidesHP15_1990 and HP15_1991 overlap by 4 nucleotidesHP15_1991 and HP15_1992 are separated by 3 nucleotidesHP15_1992 and HP15_1993 are separated by 77 nucleotidesHP15_1993 and HP15_1994 are separated by 17 nucleotides HP15_1988: HP15_1988 - hypothetical protein, at 2,098,935 to 2,099,276 _1988 HP15_1989: HP15_1989 - hypothetical protein, at 2,099,273 to 2,099,584 _1989 HP15_1990: HP15_1990 - hypothetical protein, at 2,099,584 to 2,099,829 _1990 HP15_1991: HP15_1991 - conserved hypothetical protein, at 2,099,826 to 2,100,191 _1991 HP15_1992: HP15_1992 - conserved hypothetical protein, at 2,100,195 to 2,101,061 _1992 HP15_1993: HP15_1993 - exonuclease RNase T and DNA polymerase III, at 2,101,139 to 2,101,711 _1993 HP15_1994: HP15_1994 - hypothetical protein, at 2,101,729 to 2,102,124 _1994 Position (kb) 2100 2101 2102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2099.226 kb on - strand, within HP15_1988at 2099.232 kb on - strand, within HP15_1988at 2099.241 kb on - strand, within HP15_1988at 2099.270 kb on - strandat 2099.278 kb on - strandat 2099.649 kb on - strand, within HP15_1990at 2099.741 kb on - strand, within HP15_1990at 2099.741 kb on - strand, within HP15_1990at 2099.787 kb on - strand, within HP15_1990at 2099.799 kb on - strand, within HP15_1990at 2099.853 kb on - strandat 2099.943 kb on - strand, within HP15_1991at 2099.953 kb on - strand, within HP15_1991at 2099.953 kb on - strand, within HP15_1991at 2100.006 kb on - strand, within HP15_1991at 2100.218 kb on + strandat 2100.239 kb on + strandat 2100.262 kb on - strandat 2100.305 kb on + strand, within HP15_1992at 2100.442 kb on - strand, within HP15_1992at 2100.442 kb on - strand, within HP15_1992at 2100.442 kb on - strand, within HP15_1992at 2100.519 kb on - strand, within HP15_1992at 2100.529 kb on + strand, within HP15_1992at 2100.580 kb on + strand, within HP15_1992at 2100.615 kb on - strand, within HP15_1992at 2100.670 kb on - strand, within HP15_1992at 2100.691 kb on + strand, within HP15_1992at 2100.848 kb on - strand, within HP15_1992at 2100.894 kb on - strand, within HP15_1992at 2101.014 kb on - strandat 2101.341 kb on + strand, within HP15_1993at 2101.355 kb on - strand, within HP15_1993at 2101.402 kb on - strand, within HP15_1993at 2101.412 kb on - strand, within HP15_1993at 2101.417 kb on - strand, within HP15_1993at 2101.502 kb on - strand, within HP15_1993at 2101.591 kb on - strand, within HP15_1993at 2101.670 kb on - strandat 2101.670 kb on - strandat 2101.670 kb on - strandat 2101.680 kb on - strandat 2101.773 kb on + strand, within HP15_1994at 2101.781 kb on - strand, within HP15_1994at 2101.799 kb on - strand, within HP15_1994at 2101.822 kb on - strand, within HP15_1994at 2101.927 kb on - strand, within HP15_1994at 2101.929 kb on - strand, within HP15_1994at 2101.971 kb on + strand, within HP15_1994

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,099,226 - HP15_1988 0.85 -0.0
2,099,232 - HP15_1988 0.87 +1.6
2,099,241 - HP15_1988 0.89 +0.4
2,099,270 - +1.2
2,099,278 - +1.0
2,099,649 - HP15_1990 0.26 +1.4
2,099,741 - HP15_1990 0.64 +1.8
2,099,741 - HP15_1990 0.64 +1.6
2,099,787 - HP15_1990 0.83 +2.0
2,099,799 - HP15_1990 0.87 +1.9
2,099,853 - -0.6
2,099,943 - HP15_1991 0.32 +3.1
2,099,953 - HP15_1991 0.35 +1.0
2,099,953 - HP15_1991 0.35 +1.1
2,100,006 - HP15_1991 0.49 +1.7
2,100,218 + +2.5
2,100,239 + -0.3
2,100,262 - +2.0
2,100,305 + HP15_1992 0.13 +1.8
2,100,442 - HP15_1992 0.28 +0.3
2,100,442 - HP15_1992 0.28 +0.4
2,100,442 - HP15_1992 0.28 +0.8
2,100,519 - HP15_1992 0.37 -0.5
2,100,529 + HP15_1992 0.39 +2.6
2,100,580 + HP15_1992 0.44 +2.5
2,100,615 - HP15_1992 0.48 +1.7
2,100,670 - HP15_1992 0.55 +0.5
2,100,691 + HP15_1992 0.57 +3.0
2,100,848 - HP15_1992 0.75 +1.0
2,100,894 - HP15_1992 0.81 +1.5
2,101,014 - +1.5
2,101,341 + HP15_1993 0.35 -0.4
2,101,355 - HP15_1993 0.38 -1.0
2,101,402 - HP15_1993 0.46 -1.0
2,101,412 - HP15_1993 0.48 -0.0
2,101,417 - HP15_1993 0.49 -0.8
2,101,502 - HP15_1993 0.63 +1.0
2,101,591 - HP15_1993 0.79 -1.3
2,101,670 - +0.1
2,101,670 - -3.2
2,101,670 - +0.3
2,101,680 - +2.2
2,101,773 + HP15_1994 0.11 +0.8
2,101,781 - HP15_1994 0.13 -0.8
2,101,799 - HP15_1994 0.18 +0.7
2,101,822 - HP15_1994 0.23 -1.5
2,101,927 - HP15_1994 0.50 +0.7
2,101,929 - HP15_1994 0.51 -0.2
2,101,971 + HP15_1994 0.61 +2.0

Or see this region's nucleotide sequence