Strain Fitness in Marinobacter adhaerens HP15 around HP15_1925

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1923 and HP15_1924 are separated by 0 nucleotidesHP15_1924 and HP15_1925 are separated by 126 nucleotidesHP15_1925 and HP15_1926 are separated by 219 nucleotides HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518 _1923 HP15_1924: HP15_1924 - polysaccharide export protein, at 2,040,519 to 2,041,067 _1924 HP15_1925: HP15_1925 - undecaprenyl-phosphate galactosephosphotransferase, at 2,041,194 to 2,042,552 _1925 HP15_1926: HP15_1926 - PEP-CTERM locus, polysaccharide deactylase, at 2,042,772 to 2,043,773 _1926 Position (kb) 2041 2042 2043Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2040.214 kb on + strand, within HP15_1923at 2040.295 kb on + strand, within HP15_1923at 2040.337 kb on - strand, within HP15_1923at 2040.358 kb on + strand, within HP15_1923at 2040.358 kb on + strand, within HP15_1923at 2040.366 kb on - strandat 2040.366 kb on - strandat 2040.366 kb on - strandat 2040.671 kb on - strand, within HP15_1924at 2040.695 kb on + strand, within HP15_1924at 2040.723 kb on + strand, within HP15_1924at 2040.731 kb on - strand, within HP15_1924at 2040.731 kb on - strand, within HP15_1924at 2040.879 kb on - strand, within HP15_1924at 2040.980 kb on + strand, within HP15_1924at 2040.993 kb on - strand, within HP15_1924at 2041.024 kb on - strandat 2041.132 kb on + strandat 2041.140 kb on - strandat 2041.160 kb on + strandat 2041.335 kb on - strand, within HP15_1925at 2041.439 kb on + strand, within HP15_1925at 2041.450 kb on + strand, within HP15_1925at 2041.467 kb on + strand, within HP15_1925at 2041.540 kb on + strand, within HP15_1925at 2041.560 kb on + strand, within HP15_1925at 2041.798 kb on - strand, within HP15_1925at 2041.798 kb on - strand, within HP15_1925at 2041.886 kb on + strand, within HP15_1925at 2041.938 kb on + strand, within HP15_1925at 2041.946 kb on - strand, within HP15_1925at 2042.062 kb on - strand, within HP15_1925at 2042.101 kb on + strand, within HP15_1925at 2042.111 kb on + strand, within HP15_1925at 2042.274 kb on - strand, within HP15_1925at 2042.284 kb on + strand, within HP15_1925at 2042.329 kb on - strand, within HP15_1925at 2042.356 kb on + strand, within HP15_1925at 2042.415 kb on + strand, within HP15_1925at 2042.415 kb on + strand, within HP15_1925at 2042.543 kb on - strandat 2042.604 kb on + strandat 2042.663 kb on + strandat 2042.684 kb on + strandat 2042.684 kb on + strandat 2042.694 kb on + strandat 2042.702 kb on - strandat 2042.799 kb on - strandat 2042.919 kb on + strand, within HP15_1926at 2042.956 kb on + strand, within HP15_1926at 2043.212 kb on + strand, within HP15_1926at 2043.229 kb on - strand, within HP15_1926at 2043.449 kb on - strand, within HP15_1926at 2043.479 kb on + strand, within HP15_1926at 2043.480 kb on - strand, within HP15_1926

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,040,214 + HP15_1923 0.81 +0.1
2,040,295 + HP15_1923 0.86 +0.1
2,040,337 - HP15_1923 0.88 -1.6
2,040,358 + HP15_1923 0.90 -0.8
2,040,358 + HP15_1923 0.90 -0.9
2,040,366 - +0.2
2,040,366 - +0.1
2,040,366 - +0.4
2,040,671 - HP15_1924 0.28 -0.2
2,040,695 + HP15_1924 0.32 -0.1
2,040,723 + HP15_1924 0.37 +1.0
2,040,731 - HP15_1924 0.39 -0.0
2,040,731 - HP15_1924 0.39 +1.2
2,040,879 - HP15_1924 0.66 -0.6
2,040,980 + HP15_1924 0.84 -0.5
2,040,993 - HP15_1924 0.86 +0.1
2,041,024 - -2.0
2,041,132 + +2.3
2,041,140 - -0.2
2,041,160 + -0.3
2,041,335 - HP15_1925 0.10 -0.0
2,041,439 + HP15_1925 0.18 +1.1
2,041,450 + HP15_1925 0.19 +0.2
2,041,467 + HP15_1925 0.20 +5.4
2,041,540 + HP15_1925 0.25 -0.7
2,041,560 + HP15_1925 0.27 +0.3
2,041,798 - HP15_1925 0.44 -1.1
2,041,798 - HP15_1925 0.44 -0.1
2,041,886 + HP15_1925 0.51 -0.4
2,041,938 + HP15_1925 0.55 -1.1
2,041,946 - HP15_1925 0.55 -1.7
2,042,062 - HP15_1925 0.64 -1.0
2,042,101 + HP15_1925 0.67 -0.1
2,042,111 + HP15_1925 0.67 -0.1
2,042,274 - HP15_1925 0.79 +0.1
2,042,284 + HP15_1925 0.80 -0.8
2,042,329 - HP15_1925 0.84 +0.1
2,042,356 + HP15_1925 0.86 -0.2
2,042,415 + HP15_1925 0.90 +1.7
2,042,415 + HP15_1925 0.90 -2.0
2,042,543 - -0.6
2,042,604 + -0.3
2,042,663 + +0.7
2,042,684 + -0.0
2,042,684 + -0.7
2,042,694 + -1.1
2,042,702 - -0.2
2,042,799 - -0.0
2,042,919 + HP15_1926 0.15 -1.1
2,042,956 + HP15_1926 0.18 -1.2
2,043,212 + HP15_1926 0.44 +0.0
2,043,229 - HP15_1926 0.46 +0.7
2,043,449 - HP15_1926 0.68 +1.0
2,043,479 + HP15_1926 0.71 -0.0
2,043,480 - HP15_1926 0.71 -0.0

Or see this region's nucleotide sequence