Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1920 and HP15_1921 are separated by 29 nucleotides HP15_1921 and HP15_1922 overlap by 4 nucleotides HP15_1922 and HP15_1923 overlap by 11 nucleotides
HP15_1920: HP15_1920 - WalW protein, at 2,035,687 to 2,036,685
_1920
HP15_1921: HP15_1921 - conserved hypothetical protein, secreted, at 2,036,715 to 2,038,073
_1921
HP15_1922: HP15_1922 - polysaccharide biosynthesis protein, at 2,038,070 to 2,038,948
_1922
HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518
_1923
Position (kb)
2036
2037
2038
2039 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2035.853 kb on - strand, within HP15_1920 at 2036.018 kb on + strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.195 kb on - strand, within HP15_1920 at 2036.260 kb on - strand, within HP15_1920 at 2036.298 kb on + strand, within HP15_1920 at 2036.551 kb on + strand, within HP15_1920 at 2036.624 kb on + strand at 2036.711 kb on - strand at 2036.783 kb on - strand at 2036.800 kb on - strand at 2036.897 kb on - strand, within HP15_1921 at 2036.950 kb on - strand, within HP15_1921 at 2037.192 kb on + strand, within HP15_1921 at 2037.249 kb on - strand, within HP15_1921 at 2037.487 kb on + strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.520 kb on + strand, within HP15_1921 at 2037.548 kb on + strand, within HP15_1921 at 2037.548 kb on + strand, within HP15_1921 at 2037.556 kb on - strand, within HP15_1921 at 2037.566 kb on - strand, within HP15_1921 at 2037.579 kb on + strand, within HP15_1921 at 2037.579 kb on + strand, within HP15_1921 at 2037.587 kb on - strand, within HP15_1921 at 2037.606 kb on + strand, within HP15_1921 at 2037.670 kb on + strand, within HP15_1921 at 2037.780 kb on + strand, within HP15_1921 at 2037.814 kb on + strand, within HP15_1921 at 2037.962 kb on + strand at 2037.962 kb on - strand at 2038.017 kb on + strand at 2038.113 kb on - strand at 2038.204 kb on + strand, within HP15_1922 at 2038.224 kb on - strand, within HP15_1922 at 2038.355 kb on - strand, within HP15_1922 at 2038.585 kb on + strand, within HP15_1922 at 2038.587 kb on + strand, within HP15_1922 at 2038.735 kb on + strand, within HP15_1922 at 2038.853 kb on - strand, within HP15_1922 at 2038.853 kb on - strand, within HP15_1922 at 2038.919 kb on - strand at 2038.923 kb on + strand at 2039.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,035,853 - HP15_1920 0.17 -1.4 2,036,018 + HP15_1920 0.33 -0.5 2,036,031 - HP15_1920 0.34 -2.6 2,036,031 - HP15_1920 0.34 -0.6 2,036,031 - HP15_1920 0.34 -0.0 2,036,195 - HP15_1920 0.51 +0.8 2,036,260 - HP15_1920 0.57 -0.2 2,036,298 + HP15_1920 0.61 +0.3 2,036,551 + HP15_1920 0.86 -1.4 2,036,624 + +0.2 2,036,711 - -0.0 2,036,783 - +0.2 2,036,800 - +0.7 2,036,897 - HP15_1921 0.13 -0.3 2,036,950 - HP15_1921 0.17 -0.1 2,037,192 + HP15_1921 0.35 +0.5 2,037,249 - HP15_1921 0.39 +1.0 2,037,487 + HP15_1921 0.57 +0.6 2,037,495 - HP15_1921 0.57 -2.8 2,037,495 - HP15_1921 0.57 -0.8 2,037,495 - HP15_1921 0.57 -1.8 2,037,495 - HP15_1921 0.57 -0.5 2,037,495 - HP15_1921 0.57 -3.6 2,037,495 - HP15_1921 0.57 +0.1 2,037,520 + HP15_1921 0.59 -0.8 2,037,548 + HP15_1921 0.61 -1.0 2,037,548 + HP15_1921 0.61 +0.2 2,037,556 - HP15_1921 0.62 -2.0 2,037,566 - HP15_1921 0.63 +0.7 2,037,579 + HP15_1921 0.64 -0.5 2,037,579 + HP15_1921 0.64 +0.2 2,037,587 - HP15_1921 0.64 -1.0 2,037,606 + HP15_1921 0.66 -0.3 2,037,670 + HP15_1921 0.70 -0.4 2,037,780 + HP15_1921 0.78 -0.0 2,037,814 + HP15_1921 0.81 -0.0 2,037,962 + -0.3 2,037,962 - -0.0 2,038,017 + -0.4 2,038,113 - -1.3 2,038,204 + HP15_1922 0.15 -0.6 2,038,224 - HP15_1922 0.18 +0.4 2,038,355 - HP15_1922 0.32 -1.2 2,038,585 + HP15_1922 0.59 -0.7 2,038,587 + HP15_1922 0.59 -0.7 2,038,735 + HP15_1922 0.76 -0.0 2,038,853 - HP15_1922 0.89 +1.2 2,038,853 - HP15_1922 0.89 -1.6 2,038,919 - +2.7 2,038,923 + -1.5 2,039,002 - -0.9
Or see this region's nucleotide sequence