Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1852 and HP15_1853 are separated by 190 nucleotides HP15_1853 and HP15_1854 are separated by 27 nucleotides HP15_1854 and HP15_1855 are separated by 174 nucleotides
HP15_1852: HP15_1852 - homoserine kinase, at 1,951,407 to 1,952,063
_1852
HP15_1853: HP15_1853 - phosphoadenosine phosphosulfate reductase, at 1,952,254 to 1,952,976
_1853
HP15_1854: HP15_1854 - transcriptional regulator, LysR family, at 1,953,004 to 1,953,981
_1854
HP15_1855: HP15_1855 - HTH-type transcriptional regulator MalT, at 1,954,156 to 1,956,948
_1855
Position (kb)
1953
1954 Strain fitness (log2 ratio)
-2
-1
0
1 at 1952.116 kb on - strand at 1952.213 kb on + strand at 1952.251 kb on + strand at 1952.970 kb on + strand at 1952.978 kb on - strand at 1952.978 kb on - strand at 1954.147 kb on + strand at 1954.198 kb on - strand at 1954.246 kb on - strand at 1954.262 kb on - strand at 1954.290 kb on + strand at 1954.393 kb on - strand at 1954.393 kb on - strand at 1954.480 kb on - strand, within HP15_1855 at 1954.559 kb on - strand, within HP15_1855 at 1954.643 kb on + strand, within HP15_1855 at 1954.705 kb on - strand, within HP15_1855 at 1954.764 kb on + strand, within HP15_1855 at 1954.772 kb on - strand, within HP15_1855 at 1954.777 kb on - strand, within HP15_1855 at 1954.852 kb on - strand, within HP15_1855 at 1954.973 kb on + strand, within HP15_1855
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,952,116 - +0.3 1,952,213 + -1.0 1,952,251 + -0.0 1,952,970 + -1.2 1,952,978 - -0.7 1,952,978 - -1.0 1,954,147 + -0.0 1,954,198 - -2.3 1,954,246 - -0.0 1,954,262 - -0.8 1,954,290 + -0.2 1,954,393 - -1.1 1,954,393 - -0.6 1,954,480 - HP15_1855 0.12 -0.1 1,954,559 - HP15_1855 0.14 -0.2 1,954,643 + HP15_1855 0.17 -1.3 1,954,705 - HP15_1855 0.20 -1.6 1,954,764 + HP15_1855 0.22 +0.2 1,954,772 - HP15_1855 0.22 -0.2 1,954,777 - HP15_1855 0.22 -1.0 1,954,852 - HP15_1855 0.25 +0.2 1,954,973 + HP15_1855 0.29 +0.0
Or see this region's nucleotide sequence